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1. Phospho-2D Western Blot

Example 1.
Jurkat cells were treated with serum starvation for 1 hour followed by adding serum to the culture medium, and culture for 4 hours before harvesting the cells. Protein extraction was prepared using 2D lysis buffer using Applied Biomics protocols. First, sample was run on 2D DIGE (pH4-7) and the gel image was scanned using Typhoon 9400 (A). Second, proteins from the 2D gel were transferred to the membrane and Western Blot was performed using mouse monoclonal anti-phosphotyrosine antibody (Clone PY20) and CF488-labeled goat anti-mouse Ig (Biotium, Hayward, California). The Western Blot image was scanned using Typhoon 9400 (B)

A. Gel image captured before the transfer
B. Fluorescent 2D Western Blot using anti-pTyr

phospho_westernblot image

Fluorescent 2-D Western Blot
Example 2.
Hela cells were treated with 1 mM sodium orthovanadate for 30 minutes, and then protein extraction was prepared using 2D lysis buffer using Applied Biomics protocols. First, sample was run on 2D DIGE (pH4-7) and the gel image was scanned using Typhoon 9400 (C). Second, proteins from the 2D gel were transferred to the membrane and the membrane image is captured (E). Western Blot was performed using mouse monoclonal anti-phosphoserine antibody (Sigma) and CF488-labeled goat anti-mouse Ig (Biotium, Hayward, California). The Western Blot image was scanned using Typhoon 9400 (D and F).
C. Gel image captured before the transfer
D. Fluorescent 2D Western Blot using anti-pSer
phospho_westernblot image
Fluorescent 2-D Western Blot

E. Protein image captured from membrane

F. 2D Western blot using anti-pSer(black and white)
Protein image captured from membrance
2D Western Blot
Example 3.
Hela cells were treated with 1 mM sodium orthovanadate for 30 minutes, and then protein extraction was prepared using 2D lysis buffer using Applied Biomics protocols. First, sample was run on 2D DIGE (pH4-7) and the gel image was scanned using Typhoon 9400 (G). Second, proteins from the 2D gel were transferred to the membrane and Western Blot was performed using pooled mouse monoclonal antibodies against phosphotyrosine, phosphoserine and phosphothreonine. The Western Blot image was scanned using Typhoon 9400 (H)
G. Gel image captured before the transfer
H. Western Blot: anti-pSer, anti-pTyr and anti-pThr
phospho_westernblot image
Western Blot Image
2. Ubiquitination
Example.
Proteins were extracted from ovarian epithelial cells or mouse liver (treated after long-term feeding with 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC), using Applied Biomics 2D DIGE protocol.

Green color: Transferred protein; Red color: Anti-Ubiquitin.

A. Protein – Gel image (mouse liver)
B. Protein – Gel image (ovarian cells)

Ubiquitination: Protein Gel Image

Ubiquitination: Protein Gel Image

C. Anti-Ubiquitin Western Blot (mouse liver)

D. Anti-Ubiquitin Western Blot (ovarian cells)
Ubiquitination: Western Blot Image
Ubiquitination: Western Blot Image

E. Protein + WB overlay (mouse liver)

F. Protein + WB Overlay (ovarian cells)
Ubiquitination: Protein + Western Blot Image
Ubiquitination: Protein + Western Blot Image
3. Acetylated-Lysine
Example:
Proteins were extracted from mouse liver (treated after long-term feeding with 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC), or from rat liver, using Applied Biomics 2D DIGE protocol.

A. Protein – Gel image (mouse liver)

B. Protein – Gel image (Rat liver)
Acetylated-Lysine: Protein   image
Acetylated-Lysine: Protein   image

C. Anti-Acetylated-Lysine WB (mouse liver)

D. Anti-Acetylated-Lysine WB (Rat liver)
Acetylated-Lysine: Western Blot Image
Acetylated-Lysine: Western Blot Image

E. Protein + WB overlay (mouse liver)

F. Protein + WB Overlay (rat liver)
Acetylated-Lysine: Protein + Western Blot Image
Acetylated-Lysine: Proteini + Western Blot Image
4. Sulfo-Tyrosine
Example:
Proteins were extracted from Mouse mammary epithelial cells, using Applied Biomics 2D DIGE protocol.
A. Protein – Gel image (mouse cells)
B. Anti-Sulfo-Tyrosine WB
Sulfo-Tyrosine: Protein Image
Sulfo-Tyrosine:Western Blot Image

C. Protein + WB overlay
Sulfo-Tyrosine:  Protein + Western Blot Image
5. Methyl-Arginine
Example:
Proteins were extracted from Mouse mammary epithelial cells, using Applied Biomics 2D DIGE protocol.
A. Protein – Gel image (mouse cells)
B. Anti-Methyl-Arginine WB
Methyl-Arginine: Protein Image
Methyl-Arginine: Western Blot  Image

C. Protein + WB overlay
Methyl-Arginine:Protein + Western Blot Image
6. Nitrotyrosine
Example:
Proteins were extracted out from Mouse liver (treated after long-term feeding with 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC), using Applied Biomics 2D DIGE protocols.
A. Protein – Gel image (mouse cells)
B. Anti-Nitrotyrosine WB
Nitrotyrosine: Protein Image
Nitrotyrosine: Western Blot

C. Protein + WB overlay
Nitrotyrosine: Protein + Western Blot
7. Biotinalytion
Example
Proteins were extracted from human lung cancer cells. 2D DIGE gel was run on using pH 3-10 linear IPG strip and then transferred to the PVDF membrane.
A: Membrane 2D image was scanned after transfer
B: Protein biotinalytion (2) was revealed using CF647-labeled strepavidin (Biotium, Hayward, California)
C: Image overlay using ImageQuant software
A. Protein – Membrane image
B. Biotin blotting
Biotinalytion: Protein Image
Biotinalytion: Biotin blotting image

C. Protein + Biotin blotting overlay
Biotinalytion: Protein + Biotin blotting Image

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