Proteomics Publications

Over 450 publications have cited our proteomics services. Check if your study material is in our image gallery. Below is a list of our featured publications:

No.Proteomics PublicationsSample Type
464Ogino N, Leite MF, Guerra MT, Kruglov E, Asashima H, Hafler DA, Ito T, Pereira JP, Peiffer BJ, Sun Z, Ehrlich BE, Nathanson MH. Neutrophils insert elastase into hepatocytes to regulate calcium signaling in alcohol-associated hepatitis. J Clin Invest. 2024 Jun 25:e171691.Human liver cells
463Barrows JK, Stubbs KA, Padilla-Montoya IF, Leeper TC, Van Dyke MW. Manganese-dependent transcription regulation by MntR and PerR in Thermus thermophilus HB8. Mol Microbiol. 2024 May 12. Online ahead of print.Bacteria cells
462Chile N, Bernal-Teran EG, Condori BJ, Clark T, Garcia HH, Gilman RH, Verastegui MR. Cysticercosis Working Group in Peru. Characterization of antigenic proteins of the Taenia solium postoncospheral form. Mol Biochem Parasitol. 2024 May 3:111621. Taenia solium
461Patil H, Cho K and Ferreira PA. Proteostatic remodeling of small heat shock chaperones - crystallins by Ran-binding protein 2 and the peptidyl-prolyl cis-trans isomerase and chaperone activities of its cyclophilin domain. ACS Chem Neuro Sci. 2024 May 15(10): 1967-1989. Mouse tissue
460Jeffrey MP, Saleem L, MacPherson CW, Tompkins TA, Clarke ST, Green-Johnson JM. A Lacticaseibacillus rhamnosus secretome induces immunoregulatory transcriptional, functional and immunometabolic signatures in human THP-1 monocytes. Sci Rep. 2024 Apr 10; 14(1):8379. Human cancer cell line
459Lin Z, Roche ME, Díaz-Barros V, Domingo-Vidal M, Whitaker-Menezes D, Tuluc M, Uppal G, Caro J, Curry JM, Martinez-Outschoorn U. MiR-200c reprograms fibroblasts to recapitulate the phenotype of CAFs in breast cancer progression. Cell Stress. 2024 Mar 11; 8:1-20. Human breast cancer
458Uzunyol A, Kasap M, Akpınar G. Isolation of Highly Enriched Nuclear Proteome Using Optimized Methods from Neuroblastoma Cells. Acta Med Nicomedia. 2024 Feb. 7(1):38-51Human cell line
457Yu HC, Jeon YG, Na AY, Han CY, Lee MR, Yang JD, Yu HC, Son JB, Kim ND, Kim JB, Lee S, Bae EJ, Park BH. p21-activated kinase 4 counteracts PKA-dependent lipolysis by phosphorylating FABP4 and HSL. Nature Metabolism. 2024 Jan; 12: Ahead of Print. Mouse tissue
456Royster A, Ren SY, Ali S, Mir S, Mir M. Modulations in the host cell proteome by the hantavirus nucleocapsid protein. PLoS Pathog. 2024 Jan; 20(1): e1011925. Human endothelial cells
455Carpo N, Tran V, Biancotti JC, Cepeda C and Espinosa-Jeffrey A. Space Flight Enhances Stress Pathways in Human Neural Stem Cells. Biomolecules. 2024 Jan; 14(1), 65. Neural stem cells
454Yimam M, Horm T, Cai S, O’Neal A, Jiao P, Hong M, Tea T, Jia Q. Discovery of Transfer Factors in Plant Source Proteins and In Vitro Assessment of Their Immunological Activities. Molecules. 2023 Dec; 28(24), 7961. Human lymphoblast cancer cells
453Applebaum N, Chemel S, Matveev S, Pal SS, Sengupta A, Lucas B, Vigodner M. Phosphoproteome analysis of the crosstalk between sumoylation and phosphorylation in mouse spermatocytes. Biochem Biophys Res Commun. 2023 Nov 12:681:194-199. Mouse spermatocyte
452Baro-Sastre B, Kim CY, Lin C, Kongsomboonvech AK, Tetard M, Salinas ND, Tolia NH, and Egan ES. Plasmodium falciparum exploits CD44 as a co-receptor for erythrocyte invasion. Blood. 2023 December, 142: 23. Human cells
451Faniyan TS, Zhang XY, Morgan DA, Robles J, Bathina S, Brookes PS, Rahmouni K, Perry RJ, Chhabra KH. A kidney-hypothalamus axis promotes compensatory glucose production in response to glycosuria. bioRxiv. 2023 Sep; 5:2023.09.01.555894. Mouse cells
450Martinez-Marin D, Helmer RA, Kaur G, Washburn RL, Martinez-Zaguilan R, Sennone SR, Dufour JM, Chilton BS. Helicase-like transcription factor (HLTF)-deleted CDX/TME model of colorectal cancer increased transcription of oxidative phosphorylation genes and diverted glycolysis to boost S-glutathionylation in lymphatic intravascular metastatic niches. PLoS One. 2023 Sep; 18(9):e0291023. Human cancer cells
449Cui SQ, Zhang TT, Xiong XR, Zhao JH, Qilin Cao QL, Zhou HX, Xia XG. Detergent-insoluble PFN1 inoculation expedites disease onset and progression in PFN1 transgenic rats. Front Neurosci. 2023 Sep; 17:1279259. Rat
448Rosa BA, Zarlenga DS, Fournet VM, E Beshah E, Hill D, Zarlenga A, Yee A, Liang XW, Shandling AD, Oberai A, Urban Jr JF, Mitreva M. Identification of broadly-conserved parasitic nematode proteins that activate immunity. Front. Parasitol. 2023 Aug. Volume 2Nematode
447Lewis SA et al. Identification of cow milk epitopes to characterize and quantify disease-specific T cells in allergic children. J Allergy Clin Immunol. 2023 Aug; S0091-6749(23)01061-8. Human T-cells
446Suzuki T, Noda T, Morishita T, Ishiguro K, Otsuka S, Aii J, Nakano A, Katsu K, Matsui K, Takeshima R, et al. Characterisation of starch properties and physical characteristics in buckwheat (Fagopyrum esculentum Moench.) mutant lacking accumulation of ‘granule-bound starch synthase a’. Plant Breeding. 2023 Aug; DOI: 10.1111/pbr.13135. Buckwheat
445Kim YN, Patil K, Ma J, Dufek GA, Pai SB. Multifaceted Effects of Kinase Inhibitors on Pancreatic Cancer Cells Reveals Pivotal Entities with Therapeutic Implications. Biomedicines. 2023 Jun; 11(6): 1716. Human cancer cell line
444Hernandez-Villaneuva M, Cordero-Molina S, Garcia CM, Contreras-Garduno J. The females' response to male attractiveness: Mate choice, larvae production and differential brain protein expression. Ethology. 2023 June; DOI: 10.1111/eth.13389. Insect brain cells
443Padgett LR, Shinkle MR, Rosario S, Stewart TM, Foley JR, Casero RA Jr, Park MH, Chung WK, Mastracci TL. Deoxyhypusine synthase mutations alter the post-translational modification of eukaryotic initiation factor 5A resulting in impaired human and mouse neural homeostasis. HGG Adv. 2023 May; 4(3): 100206. Human B-cell line
Miyazawa B, Trivedi A, Vivona L, Lin M, Potter D, Nair A, Barry M, Cap AP, Pati S. Histone deacetylase-6 modulates the effects of 4°C platelets on vascular endothelial permeability. Blood Adv. 2023 Apr; 11;7(7):1241-1257. Human platelets
441Kim H, Takegahara N, Choi Y. IgSF11-mediated phosphorylation of pyruvate kinase M2 regulates osteoclast differentiation and prevents pathological bone loss. Bone Res. 2023 Mar; 11(1):17. Bone cell lysate
440Srivastava S, Patil K, Thompson EW, Nakhai SA, Kim YN, Haynes C, Bryant C and Pai SB. Disruption of Glioblastoma Multiforme Cell Circuits with Cinnamaldehyde Highlights Potential Targets with Implications for Novel Therapeutic Strategies. Cells. 2023 Mar; 12(7): 1024. Mouse cells
439Ozturk S, Kosebent EG, Talibova G, et al. Embryonic poly(A)-binding protein interacts with translation-related proteins and undergoes phosphorylation on the serine, threonine, and tyrosine residues in the mouse oocytes and early embryos. J Assist Reprod Genet. 2023 Feb; 24. Mouse oocyte
438Elliff J, Biswas A, Kuppa S, Roshan P, Patterson A, Mattice J, Chinnaraj M, Burd R, Walker SE, Pozzi N, Antony E, Bothner B, Origanti S. Dynamic states of eIF6 and SDS variants modulate interactions with uL14 of the 60S ribosomal subunit. Nucleic Acids Res. 2023 Feb; 51(4): 1803-1822.Human cancer cells
437Bajsa-Hirschel J, Pan Z, Pandey P, Asolkar RN, Chittiboyina AG, Boddy L, Machingura MC, Duke SO. Spliceostatin C, a component of a microbial bioherbicide, is a potent phytotoxin that inhibits the spliceosome. Front Plant Sci. 2023 Jan; 13: 1011938. Arabidopsis thaliana
436Vitali R, Palone F, Armuzzi A, Fulci V, Negroni A, Carissimi C, Cucchiara S, Stronati L. Proteomic Analysis Identifies Three Reliable Biomarkers of Intestinal Inflammation in the Stools of Patients With Inflammatory Bowel Disease. J Crohns Colitis. 2023 Jan; 17(1): 92-102. Human stool
435Liu K, Hunter T, Taverner A, Yin K, MacKay J, Colebrook K, Correia M, Rapp A, Mrsny RJ. GRP75 as a functional element of cholix transcytosis. Tissue Barriers. 2023 Jan; 11(1):2039003. Human cell line
434Masoabi M, Snyman S, Van der Vyver C. Characterisation of an ethyl methanesulfonate-derived drought-tolerant sugarcane mutant line. Annals of Applied Biology. Ann Appl Biol. 2023 Jan. 82(3):343-360Sugarcane
433Wedemeyer MJ, Jennings EM, Smith HR, Chavera TS, Jamshidi RJ, Berg KA, Clarke WP. 14-3-3γ mediates the long-term inhibition of peripheral kappa opioid receptor antinociceptive signaling by norbinaltorphimine. Neuropharmacology. 2022 Dec; 1; 220: 109251. Rat cells
432Wemmer KA, Azimzadeh J, Marshall WF. Proteomic analysis of flagella from Chlamydomonas mutants lacking the central pair apparatus reveals loss of radial spoke head proteins. BioRxiv. 2022 Nov; Ahead of print. Chlamydomonas
431Ramani K, Mavila N, Abeynayake A, Tomasi ML, Wang JH, Eki Seki MM. Targeting A-kinase anchoring protein 12 phosphorylation in hepatic stellate cells regulates liver injury and fibrosis in mouse models. eLife. 2022 Oct 4; 11:e78430. Mouse cells
430Ma Y, Qiu C, Wang B, Zhang X, Wang X, Aguilera RJ, Zhang JY. Autoantibody against Tumor-Associated Antigens as Diagnostic Biomarkers in Hispanic Patients with Hepatocellular Carcinoma. Cells. 2022 Oct; 11(20): 3227. Hepatocellular carcinoma
429Pilarzyk K, Porcher L, Capell WR, Burbano SD, Davis J, Fisher JL, Gorny N, Petrolle S, Kelly MP. Conserved age-related increases in hippocampal PDE11A4 cause unexpected proteinopathies and cognitive decline of social associative memories. Aging Cell. 2022 Sep 8; e13687. Human cells
428Ziegler A, Steindl K, Hanner AS, Kumar Kar R, Prouteau C, Boland A, Deleuze JF, Coubes C, Bézieau S, Küry S, Maystadt I, Le Mao M, Lenaers G, Navet B, Faivre L, Tran Mau-Them F, Zanoni P, Chung WK, Rauch A, Bonneau D, Park MH. Bi-allelic variants in DOHH, catalyzing the last step of hypusine biosynthesis, are associated with a neurodevelopmental disorder. Am J Hum Genet. 2022 Aug 4; 109(8): 1549-1558. Cell line
427Anastasaki C, Mo J, Chen JK, Chatterjee J, Pan Y, Scheaffer SM, Cobb O, Monje M, Le LQ and Gutmann DH. Neuronal hyperexcitability drives central and peripheral nervous system tumor progression in models of neurofibromatosis-1. Nat Commun. 2022 May; 2785(2022): 13. Culture media
426Lin A, Piehowski PD, Tsai CF, Makushok T, Yi L, Diaz U, Yan C, Summers D, Sood P, Smith RD, Liu T and Marshall WF. Determining protein polarization proteome-wide using physical dissection of individual Stentor coeruleus cells. Curr Biol. 2022 May 23; 32(10): 2300-2308.e4. Cell line
425Malhotra V, Okon BP, Satsangi AT, Das S, Waturuocha UW, Vashist A, Clark-Curtiss JE, Saini DK. Mycobacterium tuberculosis PknK Substrate Profiling Reveals Essential Transcription Terminator Protein Rho and Two-Component Response Regulators PrrA and MtrA as Novel Targets for Phosphorylation. Microbiol Spectr. 2022 Apr; 10(2): e0135421. Mycobacterium tuberculosis
424Slamecka J, Tristan CA, Ryu S, Chu PH, Weber C, Deng T, Gedik Y, Ormanoglu P, Sam M, Voss TC, Simeonov A, Singec I. A Comprehensive Roadmap of Human Placental Development in vitro. bioRxiv 2022 Apr; Ahead of print. Human pluripotent stem cells
423Garcia S, Saldana-Caboverde A, Anwar M, Raval AP, Nissanka N, Pinto M, Moraes CT, Diaz F. Enhanced glycolysis and GSK3 inactivation promote brain metabolic adaptations following neuronal mitochondrial stress. Hum Mol Genet. 2022 Mar; 31(5): 692-704. Mouse cells
422Ramani K, Robinson AE, Berlind J, Fan W, Abeynayake A, Binek A, Barbier-Torres L, Noureddin M, Nissen NN, Yildirim Z, Erbay E, Mato JM, Van Eyk JE, Lu SC. S-adenosylmethionine inhibits la ribonucleoprotein domain family member 1 in murine liver and human liver cancer cells. Hepatology. 2022 Feb; 75(2): 280-296. Mouse Tissue
421Siripuram R, Bartolek Z, Patil K, Gill SS, Pai SB. Disruption of Colorectal Cancer Network by Polyphyllins Reveals Pivotal Entities with Implications for Chemoimmunotherapy. Biomedicines. 2022 February; 10(3): 583.Human cell line
420Kaya A, Dogan S, Vargovic P, Kutchy NA, Ross P, Topper E, Oko R, ver der Hoon F, Sutovsky P and Memili E. Sperm proteins ODF2 and PAWP as markers of fertility in breeding bulls. Cell Tissue Res. 2022 Jan. 387(1):159-171Bull sperm
419Lin A, Piehowski PD, Tsai CF, Makushok T, Yi L, Diaz U, Yan C, Summers D, Sood P, Smith RD, Liu T, Marshall WF. Proteomic Dissection of a Giant Cell. BioRxiv. 2022 January; Ahead of print.Mammalian cells
418Luo M, Fu A, Wu R, Wei N, Song K, Lim S, Luo KQ. High Expression of G6PD Increases Doxorubicin Resistance in Triple Negative Breast Cancer Cells by Maintaining GSH Level. Int J Biol Sci. 2022 January; 18(3): 1120-1133.Human cell line
417Salinero S, Uranga L, Talipov M. Efficient Protocol for Expression and Purification of DUSP5. N M J Sci. 2021 Dec; 55: 12-19.Human cells
416Meza-Segura M, Birtley JR, Maldonado-Contreras A, Mueller C, Simin KJ, Stern LJ, McCormick BA. SepA Enhances Shigella Invasion of Epithelial Cells by Degrading Alpha-1 Antitrypsin and Producing a Neutrophil Chemoattractant. mBio. 2021 Dec; 12(6): e0283321. Human colon
415Pilarzyk K, Farmer R, Porcher L, Kelly MP. The Role of PDE11A4 in Social Isolation-Induced Changes in Intracellular Signaling and Neuroinflammation. Front Pharmacol. 2021 November; 12: 749628.Mouse brain
414Dhir H, Choudhury M, Patil K, Cheung C, Bodlak A, Pardo D, Adams A, Travaglino S, Rojas JA, Pai SB. Interception of Signaling Circuits of Esophageal Adenocarcinoma Cells by Resveratrol Reveals Molecular and Immunomodulatory Signatures. Cancers. 2021 November; 13(22): 5811. Human cells
413Bourdenx M, Martin-Segura A, Scrivo A, Rodriguez-Navarro J, Kaushik S, Tasset I, Diaz A, Strom NJ, Xin Q, Juste YR, Stevenson E, Luengo E, Clement C, Choi SJ, Krogan NJ, Mosharov EV, Santambrogio L, Grueninger F, Collin L, Swaney DL, Sulzer D, Gavathiotis E, Cuervo AM. Chaperone-mediated autophagy prevents collapse of the neuronal metastable proteome. Cell. 2021 May; 184(10): 2696-2714. Mouse cells
412Chen Z, Hankey W, Zhao Y, Groth J, Huang F, Wang H, Campos AR, Huang J, Roeder RG, Wang Q. Transcription recycling assays identify PAF1 as a driver for RNA Pol II recycling. Nat Commun. 2021 Nov; 12(1): 6318. Human cell line
411Sengupta A, Nanda M, Tariq SB, Kiesel T, Perlmutter K, Vigodner M. Sumoylation and its regulation in testicular Sertoli cells. Biochem Biophys Res Commun. 2021 Nov; 580: 56-62. Mouse cell line
410Sharma M, Castro-Piedras I, Rasha F, Ramachandran S, Sennoune SR, Furr K, Almodovar S, Ganapathy V, Grisham MB, Rahman RL, Pruitt K. Dishevelled-1 DIX and PDZ domain lysine residues regulate oncogenic Wnt signaling. Oncotarget. 2021 Oct; 12(22): 2234-2251. Breast cancer cells
409MA JJ, Scott CA, Ho YN, Mahabaleshwar H, Marsay KS, Zhang C, Teow CKJ, Ng SS, Zhang W, Tergaonkar V, Partridge LJ, Roy S, Amaya E, Carney TJ. Matriptase activation of Gq drives epithelial disruption and inflammation via RSK and DUOX. eLife. 2021 Jun; 10: e66596. Zebrafish embryos
408Vera-Otarola J, Castillo-Vargas E, Angulo J, Barriga FM, Batlle E, Lopez-Lastra M. The viral nucleocapsid protein and the human RNA-binding protein Mex3A promote translation of the Andes orthohantavirus small mRNA. PLoS Pathog. 2021 Sep; 17(9): e1009931. Human cell line
407McDermott JP, Numata S and Blanco G. Na,K-ATPase Atp1a4 isoform is important for maintaining sperm flagellar shape. J Assist Reprod Genet. 2021 Jun; 38(6):1493-1505. Mouse sperm
406Wang W and Ledee D. ACAA2 is a ligand-dependent coactivator for thyroid hormone receptor β1. Biochem Biophys Res Commun. 2021 Oct 22; 576:15-21. Mouse heart
405Huang H, Dabrazhynetskaya A, Pluznik J, Zheng J, Wu Y, Chizhikov V, Buehler PW, Yamada KM, Dhawan S. Hemin activation abrogates Mycoplasma hyorhinis replication in chronically infected prostate cancer cells via heme oxygenase-1 induction. FEBS Open Bio. 2021 Oct; 11(10): 2727-2739. Human cell line
404Park MH, Kar RK, Banka S, Ziegler A, Chung WK. Post-translational formation of hypusine in eIF5A: implications in human neurodevelopment. Amino Acids. 2021 Jul; Online ahead of print. Human cell line
403Helmer RA, Martinez-Zaguilan R, Kaur G, Smith LA, Dufour JM, Chilton BS. Helicase-like transcription factor-deletion from the tumor microenvironment in a cell line-derived xenograft model of colorectal cancer reprogrammed the human transcriptome-S-nitroso-proteome to promote inflammation and redirect metastasis.  PLoS One. 2021 May; 16(5): e0251132. Human cell line
402Rocha FG, Ottenberg G, Eure ZG, Davey ME, Gibson FC 3rd. Sphingolipid Containing Outer Membrane Vesicles Serve as a Delivery Vehicle to Limit Macrophage Immune Response to Porphyromonas gingivalis. Infect Immun. 2021 Mar; 89(4): e00614-20.Human cell line
401Vasquez PL, Mishra S, Kuppuswamy SK, Crowley PJ, Brady LJ. Protein Interactomes of Streptococcus mutans YidC1 and YidC2 Membrane Protein Insertases Suggest SRP Pathway-Independent- and -Dependent Functions, Respectively.  mSphere. 2021 Mar; 6(2): e01308-20. Bacteria
400Hohrman K, Gonçalves D, Morano KA, Johnson JL. Disrupting progression of the yeast Hsp90 folding pathway at different transition points results in client-specific maturation defects.  Genetics. 2021 Mar; 217(3): iyab009.Yeast
399Krishna S, Choudhury A, Seo K, Ni LJ, Kakaizada S, Lee A, Aabedi A, Cao C, Sudharshan R, Egladyous A, Almeida N, Venkatesh HS, Findlay A, Nagarajan S, Raleigh D, Brang D, Monje M, Hervey-Jumper SL Glioblastoma remodeling of neural circuits in the human brain decreases survival.  Biorxiv. 2021 Feb. Ahead of print. Human cell line
398Jiajia MA, Scott CA, Ho YN, Mahabaleshwar H, Marsay KS, Zhang C, Teow CKJ, Ng SS, Zhang W, Tergaonkar V, Partridge LJ, Roy S, Amaya E, Carney TJ. Matriptase generates a tissue damage response via promoting Gq signalling, leading to RSK and DUOX activation.  ELife. 2021 Jun. 24: 10: e66596. Zebrafish embryos
397Jiang H, Patil K, Vashi A, Wang Y, Strickland E, Pai SB. Cellular molecular and proteomic profiling deciphers the SIRT1 controlled cell death pathways in esophageal adenocarcinoma cells.  Cancer Treat Res Commun. 2021 Jan; 26: 100271.Human cell line
396Castro-Piedras I, Vartak D, Sharma M, Pandey S, Casas L, Molehin D, Rasha F, Fokar M, Nichols J, Almodovar S, Rahman RL, Pruitt K. Identification of Novel MeCP2 Cancer-Associated Target Genes and Post-Translational Modifications. Front Oncol. 2020 Dec; 10: 576362. Human cell line
395Roche ME, Lin Z, Whitaker-Menezes D, Zhan T, Szuhai K, Bovee JVMG, Abraham JA, Jiang W, Martinez-Outschoorn U, Basu-Mallick A. Translocase of the outer mitochondrial membrane complex subunit 20 (TOMM20) facilitates cancer aggressiveness and therapeutic resistance in chondrosarcoma.  Biochim Biophys Acta Mol Basis Dis. 2020 Dec; 1866(12): 165962. Human cell line
394Zhu WZ, Olson A, Portman M and Ledee D. Sex impacts cardiac function and the proteome response to thyroid hormone in aged mice.  Proteome Sci. 2020 Dec; 18(1): 11.Mouse tissue
393Ibrahimovic M, Franzmann E, Mondul AM, Weh KM, Howard C, Hu JJ, Goodwin WJ, Kresty LA. Disparities in Head and Neck Cancer: A Case for Chemoprevention with Vitamin D.  Nutrients. 2020 Aug; 12(9): 2638.Cancer cell line
392Iosef C, Pedroza AJ, Cui JZ, Dalal AR, Arakawa M, Tashima Y, Koyano TK, Burdon G, Churovich SMP, Orrick JO, Pariani M, Fischbein MP. Quantitative proteomics reveal lineage-specific protein profiles in iPSC-derived Marfan syndrome smooth muscle cells.  Sci Rep. 2020 Nov; 10(1): 20392.Human tissue
391García-Domínguez DJ, Hontecillas-Prieto L, Kaliszczak M, He M, Burguillos MA, Bekay R, Abdul-Salam VB, Khozoie C, Shah K, O'Neill K, de Álava E, Silver A, Syed N, Aboagye EO, Hajji N. Novel nuclear role of HDAC6 in prognosis and therapeutic target for colorectal cancer.  BioRxiv. 2020 Nov.Human cell line
390Hwang HV, Sandeep N, Paige SL, Ranjbarvaziri S, Hu DQ, Zhao M, Lan IS, Coronado M, Kooiker KB, Wu SM, Fajardo G, Bernstein D, Reddy S. 4HNE Impairs Myocardial Bioenergetics in Congenital Heart Disease-Induced Right Ventricular Failure.  Circulation. 2020 Oct 27; 142(17): 1667-1683.Human biopsy
389Nguyen K, Chau VQ, Mauro AG, Durrant D, Toldo S, Abbate A, Das A, Salloum FN. Hydrogen Sulfide Therapy Suppresses Cofilin-2 and Attenuates Ischemic Heart Failure in a Mouse Model of Myocardial Infarction.  J Cardiovasc Pharmacol Ther. 2020 Sep; 25(5): 472-483.Rat plasma
388Gupte R, Dhagia V, Rocic P, Ochi R, Gupte SA. Glucose-6-phosphate dehydrogenase increases Ca2+ currents by interacting with Cav1.2 and reducing intrinsic inactivation of the L-type calcium channel.  Am J Physiol Heart Circ Physiol. 2020 Jul; 319(1): H144-H158.Rat tissue
387Álvarez-Izquierdo M, Esteban JG, Muñoz-Antoli C, Toledo R. Ileal proteomic changes associated with IL-25-mediated resistance against intestinal trematode infections.  Parasites Vectors. 2020 Jul; 13(1): 336. Mouse intestine
386Oh C, Kim Y, Chang KO. Caspase-mediated cleavage of nucleocapsid protein of a protease-independent porcine epidemic diarrhea virus strain.  Parasites Vectors. 2020 Jul; 13(1): 336. Human cell line
385Curry E, Easley JS, Wojtusik J and Roth TL. Identification of mink (Neovison vison) fecal proteins during embryonic diapause and placental pregnancy for non-invasive pregnancy diagnosis in wildlife. Bioscientifica Proceedings. 2020 Jun; 10: ISEDISED7. Mink fecal
384Nowak G, Megyesi J. Protein kinase Cα mediates recovery of renal and mitochondrial functions following acute injury. FEBS J. 2020 May; 287(9): 1830-1849. Mouse cells
383Kumar S, Singh SK, Viswakarma N, Sondarva G, Nair RS, Sethupathi P, Sinha SC, Emmadi R, Hoskins K, Danciu O, Thatcher GRJ, Rana B, Rana A. Mixed Lineage Kinase 3 inhibition induces T cell activation and cytotoxicity.  PNAS. 2020 Apr; 117(14): 7961-7970.Human T cells
382Paes VM, de Figueiredo JR, Ryan PL, Willard ST, Feugang JM. Comparative Analysis of Porcine Follicular Fluid Proteomes of Small and Large Ovarian Follicles.  Biology (Basel). 2020 May; 9(5): E101.Porcine ovarian follicles
381Vasquez PL, Mishra S, Kuppuswamy SK, Crowley PJ, Brady J. Protein Interactomes Identify Distinct Pathways for Streptococcus mutans YidC1 and YidC2 Membrane Protein Insertases.  BioRxiv. 2020 Apr. Bacteria
380Shires SE, Quiles JM, Najor RH, Leon LJ, Cortez MQ, Lampert MA, Mark A, Gustafsson ÅB. Nuclear Parkin Activates the ERRα Transcriptional Program and Drives Widespread Changes in Gene Expression Following Hypoxia.  Sci Rep. 2020 May; 10(1): 8499.Mouse heart
379Li H, Wang Y, Pang X, Xie C, Deeg HJ, Wang H, Wan T, Wu J, Guan F, Li X. Elevated TWIST1 expression in myelodysplastic syndromes/acute myeloid leukemia reduces efficacy of hypomethylating therapy with decitabine.  Haematologica. 2020 Jan; 105(10): e502.Human cell line
378Kim H, Walsh MC, Yu J, Laskoski P, Takigawa K, Takegahara N, Choi Y. Methylosome protein 50 associates with the purinergic receptor P2X5 and is involved in osteoclast maturation.  FEBS Lett. 2020 Jan; 594(1): 144-152.Human cell line
377Sanchez TW, Li B, Molinaro C, Casiano CA, Bellinger DL, Mata-Greenwood E. Maternal plasma proteomics in a rat model of pregnancy complications reveals immune and pro-coagulant gene pathway activation.  Am J Reprod Immunol. 2020 Feb; 83(2): e13205.Rat serum
376Li X, Wang L, Cykowski M, He T, Liu T, Chakranarayan J, Rivera A, Zhao H, Powell S, Xia W, Wong STC. OCIAD1 contributes to neurodegeneration in Alzheimer's disease by inducing mitochondria dysfunction, neuronal vulnerability and synaptic damages. EBioMedicine. 2020 Jan; 51: 102569.Mouse brain
375Todorov SD, Cavicchioli VQ, Ananieva M, Bivolarski VP, Vasileva TA, Hinkov AV, Todorov DG, Shishkov S, Haertlé T, Iliev IN, Nero LA, Ivanova IV. Expression of coagulin A with low cytotoxic activity by Pediococcus pentosaceus ST65ACC isolated from raw milk cheese.  J Appl Microbiol. 2019 Oct; 128(2): 458-472.Bacteria
374Sharma M, Molehin D, Castro-Piedras I, Martinez EG, Pruitt K. Acetylation of conserved DVL-1 lysines regulates its nuclear translocation and binding to gene promoters in triple-negative breast cancer.  Sci Rep. 2019 Nov; 9(1): 16257.Human cell line
373Benedetti F, Krishnan S, Cocchi F, Tettelin H, Gallo RC, Zella D, Curreli S. Proteome analysis of Mycoplasma fermentans cultured under aerobic and anaerobic conditions.  Translational Medicine Communications. 2019 Oct; 4(1): 15.Bacteria
372Zhou G, Liao MM, Wang F, Qi XY, Yang P, Berceli SA, Sharma AK, Upchurch Jr GR, Jiang ZH. Cyclophilin A contributes to aortopathy induced by postnatal loss of smooth muscle TGFBR1. FASEB J. 2019 Oct; 33(10): 11396-11410. Mouse tissue
371Peng WX, He RZ, Zhang ZQ, Yang L, Mo YY. LINC00346 promotes pancreatic cancer progression through the CTCF-mediated Myc transcription. Oncogene. 2019 Oct; 38(41): 6770-6780. Human cell line
370LaFavers KA, Macedo E, Garimella PS, Lima C, Khan S, Myslinski J, McClintick J, Witzmann FA, Winfree S, Phillips CL, Hato T, Dagher PC, Wu XR, El-Achkar TM, Micanovic R. Circulating uromodulin inhibits systemic oxidative stress by inactivating the TRPM2 channel.  Science Translational Medicine. 2019 Oct; 11(512): eaaw3639.Mouse tissue
369Poudyal D, Yang J, Chen Q, Goswami S, Adelsberger JW, Das S, Herman A, Hornung RL, Andresson T, Imamichi T. IL-27 posttranslationally regulates Y-box binding protein-1 to inhibit HIV-1 replication in human CD4+ T cells.  AIDS. 2019 Oct; 33(12): 1819–1830.Human blood T cells
368Gargaro M, Vacca C, Massari S, Scalisi G, Manni G, Mondanelli G, Mazza EMC, Bicciato S, Pallotta MT, Orabona C, Belladonna ML, Volpi C, Bianchi R, Matino D, Iacono A, Panfili E, Proietti E, Iamandii IM, Cecchetti V, Puccetti P, Tabarrini O, Fallarino F, Grohmann U. Engagement of Nuclear Coactivator 7 by 3-Hydroxyanthranilic Acid Enhances Activation of Aryl Hydrocarbon Receptor in Immunoregulatory Dendritic Cells.  Front Immunol. 2019 Aug; 10: 1973.Mouse blood cells
367Chen M, Sutherland A, Birrueta G, Laubach S, Leonard S, Peters B, Schulten V. Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow's Milk-Containing Food Extracts.  Cells. 2019 Jul; 8(7): 667.Cow’s milk
366Lellis AD, Patrick RM, Mayberry LK, Lorence A, Campbell ZC, Roose JL, Frankel LK, Bricker TM, Hellmann HA, Mayberry RW, Zavala AS, Choy GS, Wylie DC, Abdul-Moheeth M, Masood A, Prater AG, Van Hoorn HE, Cole NA, Browning KS. eIFiso4G Augments the Synthesis of Specific Plant Proteins Involved in Normal Chloroplast Function.  Plant Physiol. 2019 Sep; 181(1): 85-96.Plant tissue
365Oh HYP, Ellero-Simatos S, Manickam R, Tan NS, Guillou H, Wahli W. Depletion of Gram-Positive Bacteria Impacts Hepatic Biological Functions During the Light Phase.  Int J Mol Sci. 2019 Feb; 20(4): 812.Mouse tissue
364Medrano E, Merselis DG, Bellantuono AJ, Rodriguez-Lanetty M. Proteomic Basis of Symbiosis: A Heterologous Partner Fails to Duplicate Homologous Colonization in a Novel Cnidarian- Symbiodiniaceae Mutualism.  Front Microbiol. 2019 May; 10: 1153.Reef corals and sea anemones
363Hughes CK, Maalouf SW, Liu WS, Pate JL. Molecular profiling demonstrates modulation of immune cell function and matrix remodeling during luteal rescue.  Biol Reprod. 2019 Jun; 100(6): 1581-1596.Bovine cells
362White CR, Dungan M, Carrithers MD. Activation of human macrophage sodium channels regulates RNA processing to increase expression of the DNA repair protein PPP1R10.  Immunobiology. 2019 Jan; 224(1): 80-93.Human cells
361Stone S, Abreu D, Mahadevan J, Asada R, Kries K, Graf R, Marshall BA, Hershey T, Urano F. Pancreatic stone protein/regenerating protein is a potential biomarker for endoplasmic reticulum stress in beta cells.  Sci Rep. 2019 Mar; 9(1): 5199.Human cells
360Manna PR, Ahmed AU, Vartak D, Molehin D, Pruitt K. Overexpression of the steroidogenic acute regulatory protein in breast cancer: Regulation by histone deacetylase inhibition.  Biochem Biophys Res Commun. 2019 Feb; 509(2): 476-482.Human cell line
359Gama Sosa MA, De Gasperi R, Perez Garcia GS, Perez GM, Searcy C, Vargas D, Spencer A, Janssen PL, Tschiffely AE, McCarron RM, Ache B, Manoharan R, Janssen WG, Tappan SJ, Hanson RW, Gandy S, Hof PR, Ahlers ST, Elder GA. Low-level blast exposure disrupts gliovascular and neurovascular connections and induces a chronic vascular pathology in rat brain. Acta Neuropathol Commun. 2019 Jan; 7(1): 6.Mouse tissue
358Roy R, Hahm ER, White AG, Anderson CJ, Singh SV. AKT-dependent sugar addiction by benzyl isothiocyanate in breast cancer cells.  Mol Carcinog. 2019 Jun; 58(6): 996-1007. Human cell line
357Cia MC, de Carvalho G, Azevedo RA, Monteiro-Vitorello CB, Souza GM, Nishiyama-Junior MY, Lembke CG, Antunes de Faria RSDC, Marques JPR, Melotto M, Camargo LEA. Novel Insights Into the Early Stages of Ratoon Stunting Disease of Sugarcane Inferred from Transcript and Protein Analysis.  Phytopathology. 2018 Dec; 108(12): 1455-1466.
Plant tissue
356Leiphrakpam PD, Brattain MG, Black JD, Wang J. TGFβ and IGF1R signaling activates protein kinase A through differential regulation of ezrin phosphorylation in colon cancer cells.  J Biol Chem. 2018 May; 293(21): 8242-8254. Human cells
355Wei C, Stock L, Schneider-Gold C, Sommer C, Timchenko NA, Timchenko L. Reduction of Cellular Nucleic Acid Binding Protein Encoded by a Myotonic Dystrophy Type 2 Gene Causes Muscle Atrophy.  Mol Cell Biol. 2018 Jun; 38(14): e00649-17. Mouse muscle
354Nowak G, Bakajsova-Takacsova D. Protein kinase Cε targets respiratory chain and mitochondrial membrane potential but not F0 F1 -ATPase in renal cells injured by oxidant. Mol Cell Biol. 2018 Jun; 38(14): e00649-17. Mitochondria
353Bassett B, Waibel B, White A, Hansen H, Stephens D, Koelper A, Larsen EM, Kim C, Glanzer A, Lavis LD, Hoops GC, Johnson RJ. Measuring the Global Substrate Specificity of Mycobacterial Serine Hydrolases Using a Library of Fluorogenic Ester Substrates.  ACS Infect Dis. 2018 Jun; 4(6): 904-911.Bacteria
352Sharma S, Hartmann JD, Watzinger P, Klepper A, Peifer C, Kötter P, Lafontaine DLJ, Entian KD. A single N1-methyladenosine on the large ribosomal subunit rRNA impacts locally its structure and the translation of key metabolic enzymes. Sci Rep. 2018 Aug; 8(1): 11904. Yeast
351Hato T, Zollman A, Plotkin Z, El-Achkar TM, Maier BF, Pay SL, Dube S, Cabral P, Yoshimoto M, McClintick J, Dagher PC. Endotoxin Preconditioning Reprograms S1 Tubules and Macrophages to Protect the Kidney. J Am Soc Nephrol. 2018 Jan; 29(1): 104-117. Mouse tissue
350Jorrin-Novo JV, Komatsu S, Sanchez-Lucas R, Rodríguez de Francisco LE. Gel electrophoresis-based plant proteomics: Past, present, and future. Happy 10th anniversary Journal of Proteomics!  J Proteomics. 2019 Apr; 198:1-10.
Plant tissue
349Huppert LA, Sinclair M, Lai JC. Identifying Novel Biomarkers of Frailty in Cirrhosis: Results from an Unbiased Proteomics Search from the Functional Assessment in Liver Transplantation (FrAILT) Study.  OBM Transplantation. 2018 Nov; 2(4): 028.
Human plasma
348Lyu Q, Dhagia V, Han Y, Guo B, Wines-Samuelson ME, Christie CK, Yin Q, Slivano OJ, Herring P, Long X, Gupte SA, Miano JM. CRISPR-Cas9-Mediated Epitope Tagging Provides Accurate and Versatile Assessment of Myocardin-Brief Report.  Arterioscler Thromb Vasc Biol. 2018 Sep; 38(9): 2184-2190. Mouse tissue
347Mocholi E, Dowling SD, Botbol Y, Gruber RC, Ray AK, Vastert S, Shafit-Zagardo B, Coffer PJ, Macian F. Autophagy Is a Tolerance-Avoidance Mechanism that Modulates TCR-Mediated Signaling and Cell Metabolism to Prevent Induction of T Cell Anergy. Cell Rep. 2018 Jul; 24(5): 1136-1150. Human T cells
346Eldakak M, Das A, Zhuang Y, Rohila JS, Glover K, Yen Y. A Quantitative Proteomics View on the Function of Qfhb1, a Major QTL for Fusarium Head Blight Resistance in Wheat.  Pathogens. 2018 Jun; 7(3): 58. Wheat
345Coleman JL, Toledo A, Benach JL. HtrA of Borrelia burgdorferi Leads to Decreased Swarm Motility and Decreased Production of Pyruvate. mBio. 2018 Jul; 9(4): e01136-18. Bacteria
344Kaspar J, Shields RC, Burne RA. Competence inhibition by the XrpA peptide encoded within the comX gene of Streptococcus mutans.  Mol Microbiol. 2018 Aug; 109(3): 345-364. Bacteria
343Molehin D, Castro-Piedras I, Sharma M, Sennoune SR, Arena D, Manna PR, Pruitt K. Aromatase Acetylation Patterns and Altered Activity in Response to Sirtuin Inhibition.  Mol Cancer Res. 2018 Oct; 16(10): 1530-1542. Human cells
342Herrera-Gamboa JG, López-Alvarado CB, Pérez-Ortega E, Damas-Buenrostro LC, Cabada-Amaya JC, Pereyra-Alférez B. Proteomic analysis of two malting barleys (Hordeum vulgare L.) and their impact on wort quality.  Journal of Cereal Science. 2018 Mar; 80: 150-157. Malted barley
341Faccidomo S, Swaim KS, Saunders BL, Santanam TS, Taylor SM, Kim M, Reid GT, Eastman VR, Hodge CW. Mining the nucleus accumbens proteome for novel targets of alcohol self-administration in male C57BL/6J mice.  Psychopharmacology (Berl). 2018 Jun; 235(6): 1681-1696.Mouse brain
340Bonilla JC, Ryan V, Yazar G, Kokini JL, Bhunia AK. Conjugation of Specifically Developed Antibodies for High- and Low-Molecular-Weight Glutenins with Fluorescent Quantum Dots as a Tool for Their Detection in Wheat Flour Dough.  J Agric Food Chem. 2018 Apr 25; 66(16): 4259-4266. Plant
339Potter DR, Miyazawa BY, Gibb SL, Deng X, Togaratti PP, Croze RH, Srivastava AK, Trivedi A, Matthay M, Holcomb JB, Schreiber MA, Pati S. Mesenchymal stem cell-derived extracellular vesicles attenuate pulmonary vascular permeability and lung injury induced by hemorrhagic shock and trauma.  J Trauma Acute Care Surg. 2018 Feb; 84(2): 245-256. Mouse tissue
338Wang Q, Da'dara AA, Skelly PJ. The blood fluke Schistosoma mansoni cleaves the coagulation protein high molecular weight kininogen (HK) but does not generate the vasodilator bradykinin.  Parasites & Vectors. 2018 Mar; 11(1): 182. Parasites
337Feugang JM, Liao SF, Willard ST, Ryan PL. In-depth proteomic analysis of boar spermatozoa through shotgun and gel-based methods.  BMC Genomics. 2018 Jan; 19(1): 62. Pig cells
336Salman H, Shuai X, Nguyen-Lefebvre AT, Giri B, Ren M, Rauchman M, Robbins L, Hou W, Korkaya H, Ma Y. SALL1 expression in acute myeloid leukemia.  Oncotarget. 2017 Dec; 9(7): 7442-7452. Human cell line
335Schulten V, Westernberg L, Birrueta G, Sidney J, Paul S, Busse P, Peters B, Sette A. Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma.  Front Immunol. 2018 Feb; 9: 235. Mouse tissue
334Duryee MJ, Wiese BM, Bowman JR, Vanlandingham JD, Klassen LW, Thiele GE, Hunter CD, Anderson DR, Mikuls TR, Thiele GM. Liver tissue metabolically transformed by alcohol induces immune recognition of liver self-proteins but not in vivo inflammation.  Am J Physiol Gastrointest Liver Physiol. 2018 Mar; 314(3): G418-G430. Mouse tissue
333Baldus PA, Brown M, Wright RS, Campbell JA, Lute S, Chavez B, Brorson K, Mozier N. Comparison of purification strategies for antibodies used in a broad spectrum host cell protein immunoassay.  Biotechnol Bioeng. 2018 Feb; 115(2): 413-422. HCP
332Qu Y, Olsen JR, Yuan X, Cheng PF, Levesque MP, Brokstad KA, Hoffman PS, Oyan AM, Zhang W, Kalland KH, Ke X. Small molecule promotes β-catenin citrullination and inhibits Wnt signaling in cancer.  Nat Chem Biol. 2018 Jan; 14(1): 94-101. Human cell line
331C, Basa RCB, McCarthy MJ, Udeshi ND, Mertins P, Carr SA, Rouleau GA, Mastrangelo L, Li J, Gutierrez GJ, Brill LM, Venizelos N, Chen G, Nye JS, Manji H, Price JH, McClung CA, Akiskal HS, Alda M, Chuang DM, Coyle JT, Liu Y, Teng YD, Ohshima T, Mikoshiba K, Sidman RL, Halpain S, Haggarty SJ, Goshima Y, Snyder EY. Probing the lithium-response pathway in hiPSCs implicates the phosphoregulatory set-point for a cytoskeletal modulator in bipolar pathogenesis.  Proc Natl Acad Sci USA. 2017 May; 114(22): E4462-E4471. Human biopsy
330Cai Y, Wee SYK, Chen J, Teo BHD, Ng YLC, Leong KP, Lu J. Broad Susceptibility of Nucleolar Proteins and Autoantigens to Complement C1 Protease Degradation.  J Immunol. 2017 Dec; 199(12): 3981-3990. Human cell line
329Qin EY, Cooper DD, Abbott KL, Lennon J, Nagaraja S, Mackay A, Jones C, Vogel H, Jackson PK, Monje M. Neural Precursor-Derived Pleiotrophin Mediates Subventricular Zone Invasion by Glioma.  Cell. 2017 Aug; 170(5): 845-859.e19. Human cells
328Agoglia AE, Holstein SE, Small AT, Spanos M, Burrus BM, Hodge CW. Comparison of the adolescent and adult mouse prefrontal cortex proteome.  PLoS One. 2017 Jun; 12(6): e0178391. Mouse brain tissue
327Justiniano R, Perer J, Hua A, Fazel M, Krajisnik A, Cabello CM, Wondrak GT. A Topical Zinc Ionophore Blocks Tumorigenic Progression in UV-exposed SKH-1 High-risk Mouse Skin.  Photochem Photobiol. 2017 Nov; 93(6): 1472-1482. Human cell line
326Abdi K, Chen T, Klein BA, Tai AK, Coursen J, Liu X, Skinner J, Periasamy S, Choi Y, Kessler BM, Palmer RJ, Gittis A, Matzinger P, Duncan MJ, Singh NJ. Mechanisms by which Porphyromonas gingivalis evades innate immunity.  PLoS One. 2017 Aug; 12(8): e0182164. Bacteria medium
325Graham A, Holbert J, Nothnick WB. miR-181b-5p Modulates Cell Migratory Proteins, Tissue Inhibitor of Metalloproteinase 3, and Annexin A2 During In Vitro Decidualization in a Human Endometrial Stromal Cell Line.  Reprod Sci. 2017 Sep; 24(9): 1264-1274. Human cell line
324Da'dara AA, Siddons G, Icaza M, Wang Q, Skelly PJ. How schistosomes alter the human serum proteome.  Mol Biochem Parasitol. 2017 Jul; 215: 40-46. Human serum
323Duryee MJ, Clemens DL, Klassen LW, Mikuls TR, Pomplun MC, Anderson DR, Thiele GM. Identification of Malondialdehyde-Acetaldehyde-Modified Proteins From Affected Tissues in Rheumatoid Arthritis and Cardiovascular Disease.  Circulation. 2017 Nov; 136: A16797. Human biopsy
322Pan M, Wang P, Zheng C, Zhang H, Lin S, Shao B, Zhuge Q, Jin K. Aging Systemic Milieu Impairs Outcome after Ischemic Stroke in Rats.  Aging Dis. 2017 Oct; 8(5): 519-530. Rat serum
321Acevedo FE, Stanley BA, Stanley A, Peiffer M, Luthe DS, Felton GW. Quantitative proteomic analysis of the fall armyworm saliva.  Insect Biochem Mol Biol. 2017 Jul; 86:81-92. Insect saliva
320Oseroff C, Christensen LH, Westernberg L, Pham J, Lane J, Paul S, Greenbaum J, Stranzl T, Lund G, Hoof I, Holm J, Würtzen PA, Meno KH, Frazier A, Schulten V, Andersen PS, Peters B, Sette A. Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity.  Clin Exp Allergy. 2017 Apr; 47(4): 577-592. House dust mite
319Papanagnou P, Stivarou T, Papageorgiou I, Papadopoulos GE, Pappas A. Marketed drugs used for the management of hypercholesterolemia as anticancer armament.  Onco Targets Ther. 2017 Sep; 10: 4393-4411. Human cell line
318Tojais NF, Cao A, Lai YJ, Wang L, Chen PI, Alcazar MAA, de Jesus Perez VA, Hopper RK, Rhodes CJ, Bill MA, Sakai LY, Rabinovitch M. Codependence of Bone Morphogenetic Protein Receptor 2 and Transforming Growth Factor-β in Elastic Fiber Assembly and Its Perturbation in Pulmonary Arterial Hypertension.  Arterioscler Thromb Vasc Biol. 2017 Aug; 37(8): 1559-1569. Mouse tissue
317Gill TA, Chu C, Pelz-Stelinski KS. Comparative proteomic analysis of hemolymph from uninfected and Candidatus Liberibacter asiaticus-infected Diaphorina citri.  Amino Acids. 2017 Feb; 49(2): 389-406. Insect
316Garcia V, Gilani A, Shkolnik B, Pandey V, Zhang FF, Dakarapu R, Gandham SK, Reddy NR, Graves JP, Gruzdev A, Zeldin DC, Capdevila JH, Falck JR, Schwartzman ML. 20-HETE Signals Through G-Protein-Coupled Receptor GPR75 (Gq) to Affect Vascular Function and Trigger Hypertension.  Circ Res. 2017 May; 120(11): 1776-1788. Human cell line
315Morgan MS, Rider SD Jr, Arlian LG. Identification of antigenic Sarcoptes scabiei proteins for use in a diagnostic test and of non-antigenic proteins that may be immunomodulatory.  PLoS Negl Trop Dis. 2017 Jun; 11(6): e0005669. Insects
314Die JV, Arora R, Rowland LJ. Proteome dynamics of cold-acclimating Rhododendron species contrasting in their freezing tolerance and thermonasty behavior.  PLoS One. 2017 May; 12(5): e0177389. Plant tissue
313Gu Q, Mendsaikhan U, Khuchua Z, Jones BC, Lu L, Towbin JA, Xu B, Purevjav E. Dissection of Z-disc myopalladin gene network involved in the development of restrictive cardiomyopathy using system genetics approach.  World J Cardiol. 2017 Apr; 9(4): 320-331. Mouse tissue
312Singh RK, Mallela RK, Hayes A, Dunham NR, Hedden ME, Enke RA, Fariss RN, Sternberg H, West MD, Nasonkin IO. Dnmt1, Dnmt3a and Dnmt3b cooperate in photoreceptor and outer plexiform layer development in the mammalian retina.  Exp Eye Res. 2017 Jun; 159: 132-146. Mouse retina
311Lakhdar R, Drost EM, MacNee W, Bastos R, Rabinovich RA. 2D-DIGE proteomic analysis of vastus lateralis from COPD patients with low and normal fat free mass index and healthy controls.  Respir Res. 2017 May; 18(1): 81. Human biopsy
310Thornton KJ, Chapalamadugu KC, Eldredge EM, Murdoch GK. Analysis of Longissimus thoracis Protein Expression Associated with Variation in Carcass Quality Grade and Marbling of Beef Cattle Raised in the Pacific Northwestern United States.  J Agric Food Chem. 2017 Feb; 65(7): 1434-1442. Cattle tissue
309Justiniano R, Williams JD, Perer J, Hua A, Lesson J, Park SL, Wondrak GT. The B6 -vitamer Pyridoxal is a Sensitizer of UVA-induced Genotoxic Stress in Human Primary Keratinocytes and Reconstructed Epidermis.  Photochem Photobiol. 2017 Jul; 93(4): 990-998. Human cell line
308Drigeard Desgarnier MC, Fournier F, Droit A, Rochette PJ. Influence of a pre-stimulation with chronic low-dose UVB on stress response mechanisms in human skin fibroblasts.  PLoS One. 2017 Mar; 12(3): e0173740. Human skin biopsies
307Deguine J, Wei J, Barbalat R, Gronert K, Barton GM. Local TNFR1 Signaling Licenses Murine Neutrophils for Increased TLR-Dependent Cytokine and Eicosanoid Production. J Immunol. 2017 Apr; 198(7): 2865-2875. Mouse cell line
306Johnson WC, Taus NS, Reif KE, Bohaliga GA, Kappmeyer LS, Ueti MW. Analysis of Stage-Specific Protein Expression during Babesia Bovis Development within Female Rhipicephalus Microplus.  J Proteome Res. 2017 Mar; 16(3): 1327-1338.Parasite
305Koirala P, Huang J, Ho TT, Wu F, Ding X, Mo YY. LncRNA AK023948 is a positive regulator of AKT.  Nat Commun. 2017 Feb; 8: 14422. Mouse tissue
304Lopez IA, Acuna D, Edmond J. Modulatory Effects of Mild Carbon Monoxide Exposure in the Developing Mouse Cochlea.  Neurochem Res. 2017 Jan; 42(1): 151-165.Mouse tissue
303Norton RL, Fredericks GJ, Huang Z, Fay JD, Hoffmann FW, Hoffmann PR. Selenoprotein K regulation of palmitoylation and calpain cleavage of ASAP2 is required for efficient FcγR-mediated phagocytosis.  J Leukoc Biol. 2017 Feb; 101(2): 439-448. Mouse tissue
302MacPherson CW, Shastri P, Mathieu O, Tompkins TA, Burguière P. Genome-Wide Immune Modulation of TLR3-Mediated Inflammation in Intestinal Epithelial Cells Differs between Single and Multi-Strain Probiotic Combination.  PLoS One. 2017 Jan 18; 12(1): e0169847. Human cell line
301Nowak G, Takacsova-Bakajsova D, Megyesi J. Deletion of protein kinase C-ε attenuates mitochondrial dysfunction and ameliorates ischemic renal injury. Am J Physiol Renal Physiol. Am J Physiol Renal Physiol. 2017 Jan; 312(1): F109-F120. Mouse tissue
300Cho KI, Yoon D, Qiu S, Danziger Z, Grill WM, Wetsel WC, Ferreira PA. Loss of Ranbp2 in motoneurons causes disruption of nucleocytoplasmic and chemokine signaling, proteostasis of hnRNPH3 and Mmp28, and development of amyotrophic lateral sclerosis-like syndromes.  Dis Model Mech. 2017 May; 10(5): 559-579.Mouse tissue
299Akinci B, Sankella S, Gilpin C, Ozono K, Garg A, Agarwal AK. Progeroid syndrome patients with ZMPSTE24 deficiency could benefit when treated with rapamycin and dimethylsulfoxide.  Cold Spring Harb Mol Case Stud. 2017 Jan; 3(1): a001339. Human cell line
298Iyer S, Park MJ, Moons D, Kwan R, Liao J, Liu L, Omary MB. Clusterin and Pycr1 alterations associate with strain and model differences in susceptibility to experimental pancreatitis. Biochem Biophys Res Commun. 2017 Jan; 482(4): 1346-1352. Mouse tissue
297Tu MJ, Pan YZ, Qiu JX, Kim EJ, Yu AM. MicroRNA-1291 targets the FOXA2-AGR2 pathway to suppress pancreatic cancer cell proliferation and tumorigenesis.  Oncotarget. 2016 Jul; 7(29): 45547-45561. Human cell line
296Serafín-Higuera I, Garibay-Cerdenares OL, Illades-Aguiar B, Flores-Alfaro E, Jiménez-López MA, Sierra-Martínez P, Alarcón-Romero Ldel C. Differential proteins among normal cervix cells and cervical cancer cells with HPV-16 infection, through mass spectrometry-based Proteomics (2D-DIGE) in women from Southern México.  Proteome Sci. 2016 Sep; 14(1): 10. Human biopsy
295Das A, Eldakak M, Paudel B, Kim DW, Hemmati H, Basu C, Rohila JS. Leaf Proteome Analysis Reveals Prospective Drought and Heat Stress Response Mechanisms in Soybean.  Biomed Res Int. 2016 Mar; 2016: 6021047. Plant tissue
294Boşgelmez İ, Güvendik G, Dilbaz N, Saraçbaşı T, Esen M. A Combinatorial Approach in Discrimination of Alcohol Use Disorders: Inclusion of Differentially Expressed Plasma Proteins.  Acta Medica. 2016 Dec; 47(3): 99-108. Human plasma
293Evans H, Flynn AF, Mitre E. Endothelial cells release soluble factors that support the long-term survival of filarial worms in vitro.  Exp Parasitol. 2016 Nov; 170: 50-58.Parasite
292Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D. Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation.  Elife. 2016 Nov; 5: e18638.Yeast
291Singh AR, Strankman A, Orkusyan R, Purwantini E, Rawat M. Lack of mycothiol and ergothioneine induces different protective mechanisms in Mycobacterium smegmatis.  Biochem Biophys Rep. 2016 Nov; 8: 100–106.Bacteria
290Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth.  United States Patent US9417249 B2. 2016 Aug. Human cells
289Renault D, Puzin C, Foucreau N, Bouchereau A, Pétillon J. Chronic exposure to soil salinity in terrestrial species: Does plasticity and underlying physiology differ among specialized ground-dwelling spiders?  J Insect Physiol. 2016 Jul; 90: 49-58. Insect
288Yang J, Zhou Y, Zhang L, Shah N, Jin C, Palmer RJ Jr, Cisar JO. Cell Surface Glycoside Hydrolases of Streptococcus gordonii Promote Growth in Saliva.  Appl Environ Microbiol. 2016 Aug; 82(17): 5278-86. Bacteria
287Shamseldin A, El-Rahim WMA, Moawad H, Sadowsky MJ. Use of Proteomic Tools to Analyze Genes Involved in Thermal- and Alkaline-Tolerance Rhizobium Strains Nodulating Egyptian Clover.  Res J Pharm Biol Chem Sci. 2016 Sep; 7(5): 2994-3004. Bacteria
286Sourial M, Doering LC. Astrocyte-Secreted Factors Selectively Alter Neural Stem and Progenitor Cell Proliferation in the Fragile X Mouse.  Front Cell Neurosci. 2016 May; 10: 126.Mouse tissue
285Beauvais G, Bode NM, Watson JL, Wen H, Glenn KA, Kawano H, Harata NC, Ehrlich ME, Gonzalez-Alegre P. Disruption of Protein Processing in the Endoplasmic Reticulum of DYT1 Knock-in Mice Implicates Novel Pathways in Dystonia Pathogenesis.  J Neurosci. 2016 Oct; 36(40): 10245-10256. Mouse tissue
284Ho TT, Huang J, Zhou N, Zhang Z, Koirala P, Zhou X, Wu F, Ding X, Mo YY. Regulation of PCGEM1 by p54/nrb in prostate cancer.  Sci Rep. 2016 Sep; 6: 34529. Human biopsy
283Gupta N, Thakker S, Verma SC. KSHV encoded LANA recruits Nucleosome Assembly Protein NAP1L1 for regulating viral DNA replication and transcription.  Sci Rep. 2016 Sep; 6: 32633. Virus
282Bermudez JY, Webber HC, Patel GC, Yan LY, Clark AF, Mao WM. Two-Dimensional Differential In-Gel Electrophoresis (2D-DIGE) Reveals Proteins Associated with Cross-Linked Actin Networks in Human Trabecular Meshwork Cells. J Clin Exp Ophthalmol. 2016 Jan; 7(4): 584.Human cell line
281Kuhns DB, Fink DL, Choi U, Sweeney C, Lau K, Priel DL, Riva D, Mendez L, Uzel G, Freeman AF, Olivier KN, Anderson VL, Currens R, Mackley V, Kang A, Al-Adeli M, Mace E, Orange JS, Kang E, Lockett SJ, Chen D, Steinbach PJ, Hsu AP, Zarember KA, Malech HL, Gallin JI, Holland SM. Cytoskeletal abnormalities and neutrophil dysfunction in WDR1 deficiency.  Blood. 2016 Oct; 128(17): 2135-2143. Human biopsy
280Chettimada S, Joshi SR, Dhagia V, Aiezza A II, Lincoln TM, Gupte R, Miano JM, Gupte SA. Vascular smooth muscle cell contractile protein expression is increased through protein kinase G-dependent and -independent pathways by glucose-6-phosphate dehydrogenase inhibition and deficiency.  Am J Physiol Heart Circ Physiol. 2016 Oct; 311(4): H904-H912. Mouse tissue
279Yasuda R, Szatmari E, inventors; Max Planck Florida Institute For Neuroscience, assignee. Memory Performance and Prevention and Treatment of Neurodegenerative Diseases. United States Patent US20160213632 A1. 2016 Jul. Mouse brain
278Salling MC, Faccidomo SP, Li C, Psilos K, Galunas C, Spanos M, Agoglia AE, Kash TL, Hodge CW. Moderate Alcohol Drinking and the Amygdala Proteome: Identification and Validation of Calcium/Calmodulin Dependent Kinase II and AMPA Receptor Activity as Novel Molecular Mechanisms of the Positive Reinforcing Effects of Alcohol.  Biol Psychiatry. 2016 Mar; 79(6): 430-42.Mouse brain
277Cheng S, Liang X, Wang Y, Jiang Z, Liu Y, Hou W, Li S, Zhang J, Wang Z. The circadian Clock gene regulates acrosin activity of sperm through serine protease inhibitor A3K.  Exp Biol Med (Maywood). 2016 Jan; 241(2): 205-15.Mouse sperm
276Die JV, Arora R, Rowland LJ. Global patterns of protein abundance during the development of cold hardiness in blueberry.  Environ Exp Bot. 2016 Apr; 124: 11-21.Blueberry buds
275Paudel B, Das A, Tran M, Boe A, Palmer NA, Sarath G, Gonzalez-Hernandez JL, Rushton PJ, Rohila JS. Proteomic Responses of Switchgrass and Prairie Cordgrass to Senescence.  Front Plant Sci. 2016 Mar; 7: 293. Switchgrass and Cordgrass cells
274Khurana T, Newman-Lindsay S, Young PR, Slater JE. The NPC2 protein: A novel dog allergen.  Ann Allergy Asthma Immunol. 2016 May; 116(5): 440-446.e2.Dog
273Fischer CL, Dawson DV, Blanchette DR, Drake DR, Wertz PW, Brogden KA. Protein Analysis of Sapienic Acid-Treated Porphyromonas gingivalis Suggests Differential Regulation of Multiple Metabolic Pathways.  J Bacteriol. 2015 Oct; 198(1): 157-67.Bacteria
272Merched AJ, Daret D, Li L, Franzl N, Sauvage-Merched M. Specific autoantigens in experimental autoimmunity-associated atherosclerosis.  FASEB J. 2016 Jun; 30(6): 2123-34.Mouse tissue
271Grieger JC, Soltys SM, Samulski RJ. Production of Recombinant Adeno-associated Virus Vectors Using Suspension HEK293 Cells and Continuous Harvest of Vector From the Culture Media for GMP FIX and FLT1 Clinical Vector. Mol Ther. 2016. Feb; 24(2): 287-297.Human cell line
270Li YY, Wu C, Shah SS, Chen SM, Wangpaichitr M, Kuo MT, Feun LG, Han X, Suarez M, Prince J, Savaraj N. Degradation of AMPK-α1 sensitizes BRAF inhibitor-resistant melanoma cells to arginine deprivation.  Mol Oncol. 2017 Dec; 11(12): 1806-1825.Melanoma cells
269Kanekura K, Yagi T, Cammack AJ, Mahadevan J, Kuroda M, Harms MB, Miller TM, Urano F. Poly-dipeptides encoded by the C9ORF72 repeats block global protein translation. Hum Mol Genet. 2016 May; 25(9): 1803-13. Human biopsy
268Mamai W, Simard F, Couret D, Ouedraogo GA, Renault D, Dabiré KR, Mouline K. Monitoring Dry Season Persistence of Anopheles gambiae s.l. Populations in a Contained Semi-Field System in Southwestern Burkina Faso, West Africa. 
J Med Entomol. 2016 Jan; 53(1): 130-8.
267Rossetti S, Bshara W, Reiners JA, Corlazzoli F, Miller A, Sacchi N. Harnessing 3D models of mammary epithelial morphogenesis: An off the beaten path approach to identify candidate biomarkers of early stage breast cancer. Cancer Lett. 2016 Oct; 380(2): 375-83. Cell line
266Sourial M, Doering LC. Astrocyte-Secreted Factors Selectively Alter Neural Stem and Progenitor Cell Proliferation in the Fragile X Mouse.  Front Cell Neurosci. 2016 May; 10: 126. Mouse tissue
265McCracken ML, Gorini G, McCracken LM, Mayfield RD, Harris RA, Trudell JR. Inter- and Intra-Subunit Butanol/Isoflurane Sites of Action in the Human Glycine Receptor.  Front Mol Neurosci. 2016 Jun; 9: 45. Cell line
264Yang J, Zhou Y, Zhang L, Shah N, Jin C, Palmer RJ Jr, Cisar JO. Cell Surface Glycoside Hydrolases of Streptococcus gordonii Promote Growth in Saliva. Appl Environ Microbiol. 2016 Aug; 82(17): 5278-86.Bacteria
263Gonzalez-Carrillo C, Millan-Sauceda C, Lozano-Garza HG, Ortiz-Lopez R, Elizondo-Gonzalez R, Welsh O, Ocampo-Candiani J, Vera-Cabrera L. Genomic Changes Associated with the Loss of Nocardia brasiliensis Virulence in Mice after 200 In Vitro Passages. Infect Immun. 2016 Aug; 84(9): 2595-606.Mouse tissue
262Mendonça M, Moreira GM, Conceição FR, Hust M, Mendonça KS, Moreira ÂN, França RC, da Silva WP, Bhunia AK, Aleixo JA. Fructose 1,6-Bisphosphate Aldolase, a Novel Immunogenic Surface Protein on Listeria Species. PLoS One. 2016 Aug; 11(8): e0160544.Bacteria
261Kotlo K, Samarel AM, Chen HY, Aldstadt J, Danziger RS. Global comparison of phosphoproteins in human and rodent hearts: Implications for translational studies of myosin light chain and troponin phosphorylations. Springerplus. 2016 Jun; 5(1): 808. Human and rat tissue
260Dillon MB, Schulten V, Oseroff C, Paul S, Dullanty LM, Frazier A, Belles X, Piulachs MD, Visness C, Bacharier L, Bloomberg GR, Busse P, Sidney J, Peters B, Sette A. Different Bla-g T cell antigens dominate responses in asthma versus rhinitis subjects.  Clin Exp Allergy. 2015 Dec; 45(12): 1856-67.Human Cells
259Jacob L, Leib R, Ollila HM, Bonvalet M, Adams CM, Mignot E. Comparison of Pandemrix and Arepanrix, two pH1N1 AS03-adjuvanted vaccines differentially associated with narcolepsy development.  Brain Behav Immun. 2015 Jul; 47: 44-57.Virus
258Bajsa J, Pan Z, Duke SO. Cantharidin, a protein phosphatase inhibitor, strongly upregulates detoxification enzymes in the Arabidopsis proteome.  J Plant Physiol. 2015 Jan; 173: 33-40.Plant tissue
257Venkatesh HS, Johung TB, Caretti V, Noll A, Tang Y, Nagaraja S, Gibson EM, Mount CW, Polepalli J, Mitra SS, Woo PJ, Malenka RC, Vogel H, Bredel M, Mallick P, Monje M. Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion.  Cell. 2015 May; 161(4): 803-16.Human biopsy tissue
256Das JK, Felty Q. Microvascular lesions by estrogen-induced ID3: its implications in cerebral and cardiorenal vascular disease. J Mol Neurosci. 2015 Mar; 55(3): 618-31. Cell line
255Ramani K, Donoyan S, Tomasi ML, Park S. Role of methionine adenosyltransferase α2 and β phosphorylation and stabilization in human hepatic stellate cell trans-differentiation. J Cell Physiol. 2015 May; 230(5): 1075-85.Cell line
254Nowak G, Bakajsova D. Protein kinase C-α interaction with F0F1-ATPase promotes F0F1-ATPase activity and reduces energy deficits in injured renal cells.  J Biol Chem. 2015 Mar; 290(11): 7054-66.Mitochondria
253Davis AL, Qiao S, Lesson JL, Rojo de la Vega M, Park SL, Seanez CM, Gokhale V, Cabello CM, Wondrak GT. The quinone methide aurin is a heat shock response inducer that causes proteotoxic stress and Noxa-dependent apoptosis in malignant melanoma cells.  J Biol Chem. 2015 Jan; 290(3): 1623-38. Human cell line
252Kalinowska M, Castillo C, Francesconi A. Quantitative profiling of brain lipid raft proteome in a mouse model of fragile X syndrome. PLoS One. 2015 Apr; 10(4): e0121464.Mouse tissue
251Micanovic R, Khan S, El-Achkar TM. Immunofluorescence laser micro-dissection of specific nephron segments in the mouse kidney allows targeted downstream proteomic analysis.  Physiol Rep. 2015 Feb; 3(2): e12306. Mouse kidney
250Chettimada S, Gupte R, Rawat D, Gebb SA, McMurtry IF, Gupte SA. Hypoxia-induced glucose-6-phosphate dehydrogenase overexpression and -activation in pulmonary artery smooth muscle cells: implication in pulmonary hypertension. Am J Physiol Lung Cell Mol Physiol. 2015 Feb; 308(3): L287-300. Rat tissue
249Rabadi MM, Xavier S, Vasko R, Kaur K, Goligorksy MS, Ratliff BB. High-mobility group box 1 is a novel deacetylation target of Sirtuin1. Kidney Int. 2015 Jan; 87(1): 95-108.Mammalian cell line
248Weng YC, Wang G, Messing RO, Chou WH. Identification of lipocalin-2 as a PKCδ phosphorylation substrate in neutrophils. J Biomed Sci. 2015 Mar; 22(1): 21. Mouse heart
247Park SL, Justiniano R, Williams JD, Cabello CM, Qiao S, Wondrak GT. The Tryptophan-Derived Endogenous Aryl Hydrocarbon Receptor Ligand 6-Formylindolo[3,2-b]Carbazole Is a Nanomolar UVA Photosensitizer in Epidermal Keratinocytes.  J Invest Dermatol. 2015 Jun; 135(6): 1649-1658. Human cell line
246Poon E, Keung W, Liang Y, Ramalingam R, Yan B, Zhang S, Chopra A, Moore J, Herren A, Lieu DK, Wong HS, Weng Z, Wong OT, Lam YW, Tomaselli GF, Chen C, Boheler KR, Li RA. Proteomic Analysis of Human Pluripotent Stem Cell-Derived, Fetal, and Adult Ventricular Cardiomyocytes Reveals Pathways Crucial for Cardiac Metabolism and Maturation. Circ Cardiovasc Genet. 2015 Jun; 8(3): 427-36.Human stem cells
245Huang Y, Powers C, Madala SK, Greis KD, Haffey WD, Towbin JA, Purevjav E, Javadov S, Strauss AW, Khuchua Z. Cardiac metabolic pathways affected in the mouse model of barth syndrome. PLoS One. 2015 Jun; 10(6): e0128561.Mouse tissue
244Helenius TO, Misiorek JO, Nyström JH, Fortelius LE, Habtezion A, Liao J, Asghar MN, Zhang H, Azhar S, Omary MB, Toivola DM. Keratin 8 absence down-regulates colonocyte HMGCS2 and modulates colonic ketogenesis and energy metabolism.  Mol Biol Cell. 2015 Jun; 26(12): 2298-310.Mouse tissue
243Zhou Q, Hu H, He CY, Li Z. Assembly and maintenance of the flagellum attachment zone filament in Trypanosoma brucei. J Cell Sci. 2015 Jul; 128(13): 2361-72. Trypanosoma brucei
242Winkler CW, Race B, Phillips K, Peterson KE. Capillaries in the olfactory bulb but not the cortex are highly susceptible to virus-induced vascular leak and promote viral neuroinvasion. Acta Neuropathol. 2015 Aug; 130(2): 233-45. Mouse cell line
241Hato T, Winfree S, Kalakeche R, Dube S, Kumar R, Yoshimoto M, Plotkin Z, Dagher PC. The macrophage mediates the renoprotective effects of endotoxin preconditioning. J Am Soc Nephrol. 2015 Jun; 26(6): 1347-62. Mouse tissue
240Forde N, Bazer FW, Spencer TE, Lonergan P. 'Conceptualizing' the Endometrium: Identification of Conceptus-Derived Proteins During Early Pregnancy in Cattle.  Biol Reprod. 2015 Jun; 92(6): 156. Cattle body fluid
239Peterson MF, Otoc N, Sethi JK, Gupta A, Antes TJ. Integrated systems for exosome investigation.  Methods. 2015 Oct; 87: 31–45. Human cell line
238Jeon SR, Lee JW, Jang PS, Chung NG, Cho B, Jeong DC. Anti-leukemic properties of deferasirox via apoptosis in murine leukemia cell lines. Blood Res. 2015 Mar; 50(1): 33-9. Mouse cell line
237Fisher DJ, Adams NE, Maurelli AT. Phosphoproteomic analysis of the Chlamydia caviae elementary body and reticulate body forms. Microbiology (Reading). 2015 Aug; 161(8): 1648-1658. Bacteria
236Stephan JS, Fioriti L, Lamba N, Colnaghi L, Karl K, Derkatch IL, Kandel ER. The CPEB3 Protein Is a Functional Prion that Interacts with the Actin Cytoskeleton.  Cell Rep. 2015 Jun; 11(11): 1772-85. Yeast
235Hidalgo K, Mouline K, Mamai W, Foucreau N, Dabiré KR, Bouchereau A, Simard F, Renault D. Combining two-dimensional gel electrophoresis and metabolomic data in support of dry-season survival in the two main species of the malarial mosquito Anopheles gambiae. Data Brief. 2015 Sep; 5: 255-68. Insect
234Singh AK, Drolia R, Bai X, Bhunia AK. Streptomycin Induced Stress Response in Salmonella enterica Serovar Typhimurium Shows Distinct Colony Scatter Signature. PLoS One. 2015 Aug; 10(8): e0135035.Bacteria
233Johnson-Kerner BL, Garcia Diaz A, Ekins S, Wichterle H. Kelch Domain of Gigaxonin Interacts with Intermediate Filament Proteins Affected in Giant Axonal Neuropathy. PLoS One. 2015 Oct; 10(10): e0140157.Human cell line
232Pandey S, Simmons GE Jr, Malyarchuk S, Calhoun TN, Pruitt K. A novel MeCP2 acetylation site regulates interaction with ATRX and HDAC1. Genes Cancer. 2015 Sep; 6(9-10): 408-21. Human cell line
231Ooi TE, Yeap WC, Daim LD, Ng BZ, Lee FC, Othman AM, Appleton DR, Chew FT, Kulaveerasingam H. Differential abundance analysis of mesocarp protein from high- and low-yielding oil palms associates non-oil biosynthetic enzymes to lipid biosynthesis. Proteome Sci. 2015 Nov; 13: 28.Plant
230Hayashi G, Moro CF, Rohila JS, Shibato J, Kubo A, Imanaka T, Kimura S, Ozawa S, Fukutani S, Endo S, Ichikawa K, Agrawal GK, Shioda S, Hori M, Fukumoto M, Rakwal R. 2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima. Plant Signal Behav. 2015 Dec; 10(12): e1103406.Plant
229Brown T, Rodriguez-Lanetty M. Defending against pathogens - immunological priming and its molecular basis in a sea anemone, cnidarian. Sci Rep. 2015 Dec; 5: 17425.Sea anemone
228Lu S, Kanekura K, Hara T, Mahadevan J, Spears LD, Oslowski CM, Martinez R, Yamazaki-Inoue M, Toyoda M, Neilson A, Blanner P, Brown CM, Semenkovich CF, Marshall BA, Hershey T, Umezawa A, Greer PA, Urano F. A calcium-dependent protease as a potential therapeutic target for Wolfram syndrome. PNAS USA. 2014 Dec; 111(49): E5292-301.Mouse brain tissue
227Fredericks GJ, Hoffmann FKW, Rose AH, Osterheld HJ, Hess FM, Mercier F, Hoffmann PR. Stable expression and function of the inositol 1,4,5-triphosphate receptor requires palmitoylation by a DHHC6/selenoprotein K complex. PNAS USA. 2014 Nov; 111(46):16478-83. Human T cells
226Shi J, Wang Y, Zeng L, Wu Y, Deng J, Zhang Q, Lin Y, Li J, Kang T, Tao M, Rusinova E, Zhang G, Wang C, Zhu H, Yao J, Zeng YX, Evers BM, Zhou MM, Zhou BP. Disrupting the interaction of BRD4 with diacetylated Twist suppresses tumorigenesis in basal-like breast cancer. Cancer Cell. 2014 Feb; 25(2): 210-25. Cancer cells
225Patil H, Saha A, Senda E, Cho KI, Haque M, Yu M, Qiu S, Yoon D, Hao Y, Peachey NS, Ferreira PA. Selective impairment of a subset of Ran-GTP-binding domains of ran-binding protein 2 (Ranbp2) suffices to recapitulate the degeneration of the retinal pigment epithelium (RPE) triggered by Ranbp2 ablation. J Biol Chem. 2014 Oct; 289(43): 29767-89.Mouse tissue
224Miharada K, Sigurdsson V, Karlsson S. Dppa5 improves hematopoietic stem cell activity by reducing endoplasmic reticulum stress. Cell Report. 2014 Jun; 7(5): 1381-1392. Mouse stem cell
223Leiphrakpam PD, Rajput A, Mathiesen M, Agarwal E, Lazenby AJ, Are C, Brattain MG, Chowdhury S. Ezrin expression and cell survival regulation in colorectal cancer. Cell Signal. 2014 May; 26(5): 868-79.Human tissue
222Jones A, Kainz D, Khan F, Lee C, Carrithers MD. Human macrophage SCN5A activates an innate immune signaling pathway for antiviral host defense. J Biol Chem. 2014 Dec; 289(51): 35326-40. Human macrophage
221Bowman J, Ghosh P. A complex regulatory network controlling intrinsic multidrug resistance in Mycobacterium smegmatis. Mol Microbiol. 2014. Jan; 91(1): 121-34. Bacteria
220Cho KI, Patil H, Senda E, Wang J, Yi H, Qiu S, Yoon D, Yu M, Orry A, Peachey NS, Ferreira PA. Differential loss of prolyl isomerase or chaperone activity of Ran-binding protein 2 (Ranbp2) unveils distinct physiological roles of its cyclophilin domain in proteostasis. J Biol Chem. 2014 Feb; 289(8): 4600-25. Mouse tissue
219Sang Y, Brichalli W, Rowland RR, Blecha F. Genome-wide analysis of antiviral signature genes in porcine macrophages at different activation statuses. PLoS One. 2014 Feb; 9(2): e87613.Macrophages
218Wu Z, Sahin O, Wang F, Zhang Q. Proteomic identification of immunodominant membrane-related antigens in Campylobacter jejuni associated with sheep abortion. J Proteomics. 2014 Mar; 99: 111-22. Bacteria
217Das A, Durrant D, Koka S, Salloum FN, Xi L, Kukreja RC. Mammalian target of rapamycin (mTOR) inhibition with rapamycin improves cardiac function in type 2 diabetic mice: potential role of attenuated oxidative stress and altered contractile protein expression. J Biol Chem. 2014 Feb; 289(7): 4145-60.Mouse tissue
216Le TT, Urasaki Y, Pizzorno G. Uridine prevents fenofibrate-induced fatty liver. PLoS One. 2014 Jan; 9(1): e87179.Mouse tissue
215Munje C, Shervington L, Khan Z, Shervington A. Could Upregulated Hsp70 Protein Compensate for the Hsp90-Silence-Induced Cell Death in Glioma Cells? Int J Brain Sci. 2014 Jan; 2014: 1-9. Cell line
214Mitra R, Goodman OB, Le TT. Enhanced detection of metastatic prostate cancer cells in human plasma with lipid bodies staining.  BMC Cancer. 2014 Feb; 14: 91.Human plasma
213Lisanti MP, Federica S, inventors; Thomas Jefferson University, assignee. Biomarkers and their uses in cancer detection and therapy.  United States Patent US20140026234 A1. 2014 Jan.Human tissue
212Subramanian A, Turner J, inventors; University of Nebraska, NuTech Ventures Inc, assignee. Methods of using ultrasound in tissue culture and tissue engineering.  United States Patent US20140038257 A1 2014 Feb.Tissue
211Presley GN, Payea MJ, Hurst LR, Egan AE, Martin BS, Periyannan GR. Extracellular gluco-oligosaccharide degradation by Caulobacter crescentus. Microbiology (Reading). 2014 Mar; 160(Pt 3): 635-645.Cell line
210Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. Elife. 2014 Jan; 3: e01566. Mammalian cells
209Li B, Iglesias-Pedraz JM, Chen LY, Yin F, Cadenas E, Reddy S, Comai L. Downregulation of the Werner syndrome protein induces a metabolic shift that compromises redox homeostasis and limits proliferation of cancer cells. Aging Cell. 2014 Apr; 13(2): 367-78.Cell line
208Alessio HM, Ansinelli H, Threadgill C, Hagerman AE. Comparison of gene and protein expressions in rats residing in standard cages with those having access to an exercise wheel. Biomed Res Int. 2014 2014: 950516. Rat tissue
207Burns G, Brooks K, Wildung M, Navakanitworakul R, Christenson LK, Spencer TE. Extracellular vesicles in luminal fluid of the ovine uterus. PLoS One. 2014 Mar; 9(3): e90913. Sheep tissue
206Amortegui J, Rodríguez-López A, Rodríguez D, Carrascal AK, Alméciga-Díaz CJ, Melendez Adel P, Sánchez OF. Characterization of a new bacteriocin from Lactobacillus plantarum LE5 and LE27 isolated from ensiled corn. Appl Biochem Biotechnol. 2014 Apr; 172(7): 3374-89.Cell line
205Forde N, McGettigan PA, Mehta JP, O'Hara L, Mamo S, Bazer FW, Spencer TE, Lonergan P. Proteomic analysis of uterine fluid during the pre-implantation period of pregnancy in cattle.  Reproduction. 2014 Apr; 147(5): 575-87.Cell line
204Liu XF, Yu JQ, Dalan R, Liu AQ, Luo KQ. Biological factors in plasma from diabetes mellitus patients enhance hyperglycaemia and pulsatile shear stress-induced endothelial cell apoptosis.  Integr Biol (Camb). 2014 May; 6(5): 511-22.Human cell line
203Banerjee Mustafi S, Grose JH, Zhang H, Pratt GW, Sadoshima J, Christians ES, Benjamin IJ. Aggregate-prone R120GCRYAB triggers multifaceted modifications of the thioredoxin system. Antioxid Redox Signal. 2014 Jun; 20(18): 2891-906.Mouse tissue
202Sridharan V, Aykin-Burns N, Tripathi P, Krager KJ, Sharma SK, Moros EG, Corry PM, Nowak G, Hauer-Jensen M, Boerma M. Radiation-induced alterations in mitochondria of the rat heart. Radiat Res. 2014 Mar; 181(3): 324-34.Rat tissue
201Abdi K, Singh NJ, Spooner E, Kessler BM, Radaev S, Lantz L, Xiao TS, Matzinger P, Sun PD, Ploegh HL. Free IL-12p40 monomer is a polyfunctional adaptor for generating novel IL-12-like heterodimers extracellularly. J Immunol. 2014 Jun; 192(12): 6028-36. Cell line
200Das JK, Felty Q. PCB153-induced overexpression of ID3 contributes to the development of microvascular lesions. PLoS One. 2014 Aug; 9(8): e104159.Cell line
199Banerjee HN, Hyman G, Evans S, Manglik V, Gwebu E, Banerjee A, Vaughan D, Medley J, Krauss C, Wilkins J, Smith V, Banerji A, Rousch J. Identification of the Transmembrane Glucose Regulated Protein 78 as a Biomarker for the Brain Cancer Glioblastoma Multiforme by Gene Expression and Proteomic Studies. J Membr Sci Technol. 2014 Feb; 4(1): 1000126.Human tissue
198Yavuz S, Kasap M, Akpinar G, Ozbudak E, Ural D, Berki T. Analysis of pericardial effusion from idiopathic pericarditis patients by two-dimensional gel electrophoresis. Biomed Res Int. 2014 Apr; 2014: 942718.Human body fluid
197Jiang X, Ye X, Guo W, Lu H, Gao Z. Inhibition of HDAC3 promotes ligand-independent PPARγ activation by protein acetylation. J Mol Endocrinol. 2014 Oct; 53(2): 191-200. Human tissue
196Schneider JL, Suh Y, Cuervo AM. Deficient chaperone-mediated autophagy in liver leads to metabolic dysregulation. Cell Metab. 2014 Sep; 20(3): 417-32. Human body fluid
195Nothnick WB, Graham A, Holbert J, Weiss MJ. miR-451 deficiency is associated with altered endometrial fibrinogen alpha chain expression and reduced endometriotic implant establishment in an experimental mouse model. PLoS One. 2014 Jun; 9(6): e100336. Mouse tissue
194Williams JD, Bermudez Y, Park SL, Stratton SP, Uchida K, Hurst CA, Wondrak GT. Malondialdehyde-derived epitopes in human skin result from acute exposure to solar UV and occur in nonmelanoma skin cancer tissue. J Photochem Photobiol B. 2014 Mar; 132: 56-65.Human cell line
193Wang JH, Singh R, Benoit M, Keyhan M, Sylvester M, Hsieh M, Thathireddy A, Hsieh YJ, Matin AC. Sigma S-dependent antioxidant defense protects stationary-phase Escherichia coli against the bactericidal antibiotic gentamicin. Antimicrob Agents Chemother. 2014 Oct; 58(10): 5964-75. Bacteria
192Maddi A, Haase E, Scannapieco F. Mass Spectrometric Analysis of Whole Secretome and Amylase-precipitated Secretome Proteins from Streptococcus gordonii. J Proteomics Bioinform. 2014 Sep; 7: 287-295.Bacteria
191Urasaki Y, Pizzorno G, Le TT. Uridine affects liver protein glycosylation, insulin signaling, and heme biosynthesis. PLoS One. 2014 Jun; 9(6): e99728.Mouse tissue
190Hidalgo K, Mouline K, Mamai W, Foucreau N, Dabiré KR, Bouchereau A, Simard F, Renault D. Novel insights into the metabolic and biochemical underpinnings assisting dry-season survival in female malaria mosquitoes of the Anopheles gambiae complex. J Insect Physiol. 2014 Nov; 70: 102-16.Insect
189Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth.  European Patent EP2756302 B2. 2014 Jul.Human Cells
188Gupta D, Eldakak M, Rohila JS, Basu C. Biochemical analysis of 'kerosene tree' Hymenaea courbaril L. under heat stress. Plant Signal Behav. 2014 Oct; 9(10): e972851. Kerosene tree leaves
187Pflughoeft KJ, Swick MC, Engler DA, Yeo HJ, Koehler TM. Modulation of the Bacillus anthracis secretome by the immune inhibitor A1 protease.  J Bacteriol. 2014 Jan; 196(2): 424-35. Bacteria
186Marman HE, Mey AR, Payne SM. Elongation factor P and modifying enzyme PoxA are necessary for virulence of Shigella flexneri. Infect Immun. 2014 Sep; 82(9): 3612-21. Bacteria
185Sette A, Schulten V, Grey H, Peters B, Greenbaum J, inventors; La Jolla Institute for Allergy and Immunology, assignee. Timothy grass allergens and methods and uses for immune response modulation.  United States Patent WO2013119863 A1. 2013 Aug.Mouse tissue
184Robbins ML, Roy A, Wang PH, Gaffoor I, Sekhon RS, de O Buanafina MM, Rohila JS, Chopra S. Comparative proteomics analysis by DIGE and iTRAQ provides insight into the regulation of phenylpropanoids in maize.  J Proteomics. 2013 Nov; 93: 254-75.Maize
183Hickman SE, Kingery ND, Ohsumi TK, Borowsky ML, Wang LC, Means TK, El Khoury J. The microglial sensome revealed by direct RNA sequencing.  J Proteomics. 2013 Nov; 93: 254-75.Human tissue
182Schulten V, Greenbaum JA, Hauser M, McKinney DM, Sidney J, Kolla R, Lindestam Arlehamn CS, Oseroff C, Alam R, Broide DH, Ferreira F, Grey HM, Sette A, Peters B. Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals. PNAS USA. 2013 Feb; 110(9): 3459-64.Human cell line
181Gupta P, Sothiselvam S, Vázquez-Laslop N, Mankin AS. Deregulation of translation due to post-transcriptional modification of rRNA explains why erm genes are inducible. Nat Commun. 2013 Jun; 4: 1984.Bacteria
180Nelson CM, Ackerman KM, O'Hayer P, Bailey TJ, Gorsuch RA, Hyde DR. Tumor necrosis factor-alpha is produced by dying retinal neurons and is required for Muller glia proliferation during zebrafish retinal regeneration.  J Neurosci. 2013 Apr; 33(15): 6524-39.Zebrafish
179Corena-McLeod M, Walss-Bass C, Oliveros A, Gordillo Villegas A, Ceballos C, Charlesworth CM, Madden B, Linser PJ, Van Ekeris L, Smith K, Richelson E. New model of action for mood stabilizers: phosphoproteome from rat pre-frontal cortex synaptoneurosomal preparations. PLoS One. 2013 May; 8(5): e52147.Rat brain
178Cai W, Wannemuehler Y, Dell'anna G, Nicholson B, Barbieri NL, Kariyawasam S, Feng Y, Logue CM, Nolan LK, Li G. A novel two-component signaling system facilitates uropathogenic Escherichia coli's ability to exploit abundant host metabolites. PLoS Pathog. 2013 Jun; 9(6): e1003428. Bacteria
177Chapman KM, Powell HM, Chaudhary J, Shelton JM, Richardson JA, Richardson TE, Hamra FK. Linking spermatid ribonucleic acid (RNA) binding protein and retrogene diversity to reproductive success. Mol Cell Proteomics. 2013 Nov; 12(11): 3221-36. Rat tissue
176Wu H, Sun H, Liang X, Lima WF, Crooke ST. Human RNase H1 is associated with protein P32 and is involved in mitochondrial pre-rRNA processing. PLoS One. 2013 Aug; 8(8): e71006.Immuno-precipitation
175Rajkarnikar A, Strankman A, Duran S, Vargas D, Roberts AA, Barretto K, Upton H, Hamilton CJ, Rawat M. Analysis of mutants disrupted in bacillithiol metabolism in Staphylococcus aureus. Biochem Biophys Res Commun. 2013 Jun; 436(2): 128-33.Bacteria
174Yap MN, Bernstein HD. Mutations in the Escherichia coli ribosomal protein L22 selectively suppress the expression of a secreted bacterial virulence factor. J Bacteriol. 2013 Jul; 195(13): 2991-9.Bacteria
173Balestrieri ML, Gasparrini B, Neglia G, Vecchio D, Strazzullo M, Giovane A, Servillo L, Zicarelli L, D'Occhio MJ, Campanile G. Proteomic profiles of the embryonic chorioamnion and uterine caruncles in buffaloes (Bubalus bubalis) with normal and retarded embryonic development. Biol Reprod. 2013 May; 88(5): 119.Buffalo embryos
172Zhou ZH, Kumari N, Nekhai S, Clouse KA, Wahl LM, Yamada KM, Dhawan S. Heme oxygenase-1 induction alters chemokine regulation and ameliorates human immunodeficiency virus-type-1 infection in lipopolysaccharide-stimulated macrophages. Biochem Biophys Res Commun. 2013 Jun; 435(3): 373-7.Human cells
171Zhang A, Zhou N, Huang J, Liu Q, Fukuda K, Ma D, Lu Z, Bai C, Watabe K, Mo YY. The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res. 2013 Mar; 23(3): 340-50.Human cell line
170Le TT, Ziemba A, Urasaki Y, Hayes E, Brotman S, Pizzorno G. Disruption of uridine homeostasis links liver pyrimidine metabolism to lipid accumulation. J Lipid Res. 2013 Apr; 54(4): 1044-57.Mouse liver
169Hu LY, Kontrogianni-Konstantopoulos A. The kinase domains of obscurin interact with intercellular adhesion proteins. FASEB J. 2013 May; 27(5): 2001-12.Human cell line
168Subramanian A, Turner JA, Budhiraja G, Guha Thakurta S, Whitney NP, Nudurupati SS. Ultrasonic bioreactor as a platform for studying cellular response.  Tissue Eng Part C Methods. 2013 Mar; 19(3): 244-55.Cartilage cells
167Nowak G, Bakajsova D. Assessment of mitochondrial functions and cell viability in renal cells overexpressing protein kinase C isozymes. J Vis Exp. 2013 Jan; (71): 4301.Mammalian cells
166Shanks RM, Stella NA, Arena KE, Fender JE. Mutation of crp mediates Serratia marcescens serralysin and global secreted protein production. Res Microbiol. 2013 Jan; 164(1): 38-45.Bacteria
165Zhou H, Zhao Q, Das Singla L, Min J, He S, Cong H, Li Y, Su C. Differential proteomic profiles from distinct Toxoplasma gondii strains revealed by 2D-difference gel electrophoresis. Exp Parasitol. 2013 Apr; 133(4): 376-82.Parasite
164Bodnar A. Proteomic profiles reveal age-related changes in coelomic fluid of sea urchin species with different life spans. Exp Gerontol. 2013 May; 48(5): 525-30.Sea urchin
163Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P. Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle. BMC Genomics. 2013 May; 14: 321.Bovine tissue
162Gris CF, Baldoni A. Proteomics and Its Use in Obtaining Superior Soybean Genotypes.  IntechOpen. 2013 Jan; Chapter 25: 531-552. Soybean cells
161Zhou X, Gewurz BE, Ritchie JM, Takasaki K, Greenfeld H, Kieff E, Davis BM, Waldor MK. A Vibrio parahaemolyticus T3SS effector mediates pathogenesis by independently enabling intestinal colonization and inhibiting TAK1 activation. Cell Rep. 2013 May; 3(5): 1690-702. Bacteria
160Hecht KA, Wytiaz VA, Ast T, Schuldiner M, Brodsky JL. Characterization of an M28 metalloprotease family member residing in the yeast vacuole.  FEMS Yeast Res. 2013 Aug; 13(5): 471-84.Yeast
159Romano A, Trimble L, Hobusch AR, Schroeder KJ, Amin SA, Hartnett AD, Barker RA, Crumbliss AL, Carrano CJ. Regulation of iron transport related genes by boron in the marine bacterium Marinobacter algicola DG893. Metallomics. 2013 Aug; 5(8): 1025-30.Bacteria
158Páez-Gutiérrez IA, Cadavid LF. Identification of Differently Expressed Proteins Related to Drillings Fluids Exposure in Hydractinia Symbiolongicarpus by Mass Spectrometry. Advances in Computational Biology. 2014 Jan; 232: 345-353.Marine hydra magnipapillata
157Streckfus CF, Romaguera J, Guajardo-Streckfus C. The use of salivary protein secretions as an in vivo model to study Mantel cell lymphoma progression and treatment. Cancer Invest. 2013 Aug; 31(7): 494-9.Human saliva
156Hahm ER, Lee J, Kim SH, Sehrawat A, Arlotti JA, Shiva SS, Bhargava R, Singh SV. Metabolic alterations in mammary cancer prevention by withaferin A in a clinically relevant mouse model. J Natl Cancer Inst. 2013 Aug; 105(15): 1111-22. Mouse tissue
155Khan Z, Shervington A, Munje C, Shervington L. The complexity of identifying cancer stem cell biomarkers. Cancer Invest. 2013 Jul; 31(6): 404-11. Stem cells
154Streckfus C. Salivary proteome as an in vivo model to study breast cancer progression. Defense, Security, and Sensing. 2013 May; 8723: 03D.Human saliva
153Ma H, Qazi S, Ozer Z, Zhang J, Ishkhanian R, Uckun FM. Regulatory phosphorylation of Ikaros by Bruton's tyrosine kinase.  PLoS One. 2013 Aug; 8(8): e71302. Human cells
152Sanchez-Alvarez R, Martinez-Outschoorn UE, Lin Z, Lamb R, Hulit J, Howell A, Sotgia F, Rubin E, Lisanti MP. Ethanol exposure induces the cancer-associated fibroblast phenotype and lethal tumor metabolism: implications for breast cancer prevention. Cell Cycle. 2013 Jan; 12(2): 289-301. Human cell line
151Nowak G, Soundararajan S, Mestril R. Protein kinase C-α interaction with iHSP70 in mitochondria promotes recovery of mitochondrial function after injury in renal proximal tubular cells. Am J Physiol Renal Physiol. 2013 Sep; 305(5): F764-76. Mammalian cells
150Fischer CL, Walters KS, Drake DR, Dawson DV, Blanchette DR, Brogden KA, Wertz PW. Oral mucosal lipids are antibacterial against Porphyromonas gingivalis, induce ultrastructural damage, and alter bacterial lipid and protein compositions. Int J Oral Sci. 2013 Sep; 5(3): 130-40.Bacteria
149Whitman JK, Alviar AF, Fleschner CR, Stuart MK. Monoclonal antibody 10A5 recognizes an antigen unique to the water-insoluble 25/45 membrane fraction of the rat ocular lens. Springerplus. 2013 Oct; 2: 500.Rat lenses
148Vyas AR, Hahm ER, Arlotti JA, Watkins S, Stolz DB, Desai D, Amin S, Singh SV. Chemoprevention of prostate cancer by d,l-sulforaphane is augmented by pharmacological inhibition of autophagy. Cancer Res. 2013 Oct; 73(19): 5985-95. Human tissue
147Tuteja S, Dunbar R, Qu L, Li M, Mucksavage M, DerOhannessian S, Reilly M, Rader D. Perilipin 1 (plin1) Genotype and Not Gpr109a Associated with Free Fatty Acid Rebound Following Niacin Administration. Arterioscler Thromb Vasc Biol. 2013 May; 33(5): A390.Human tissue
146Al Ghouleh I, Rodríguez A, Pagano PJ, Csányi G. Proteomic analysis identifies an NADPH oxidase 1 (Nox1)-mediated role for actin-related protein 2/3 complex subunit 2 (ARPC2) in promoting smooth muscle cell migration. Int J Mol Sci. 2013 Oct; 14(10): 20220-35.Rat cells
145Gao X, Sinha S, Belcastro M, Woodard C, Ramamurthy V, Stoilov P, Sokolov M. Splice isoforms of phosducin-like protein control the expression of heterotrimeric G proteins. J Biol Chem. 2013 Sep; 288(36): 25760-8.Rat cells
144Gorini G, Roberts AJ, Mayfield RD. Neurobiological Signatures of Alcohol Dependence Revealed by Protein Profiling. PLoS ONE. 2013 Dec; 8(12): e82656.Mouse brain
143Poon E, Yan B, Zhang S, Rushing S, Keung W, Ren L, Lieu DK, Geng L, Kong CW, Wang J, Wong HS, Boheler KR, Li RA. Transcriptome-guided functional analyses reveal novel biological properties and regulatory hierarchy of human embryonic stem cell-derived ventricular cardiomyocytes crucial for maturation. PLoS ONE. 2013 Dec; 8(12): e82656.Stem cells
142Wu Z, Sahin O, Shen Z, Liu P, Miller WG, Zhang Q. Multi-omics approaches to deciphering a hypervirulent strain of Campylobacter jejuni. Genome Biol Evol. 2013 Nov; 5(11) 2217-30. Bacteria
141Clement CC, Aphkhazava D, Nieves E, Callaway M, Olszewski W, Rotzschke O, Santambrogio L. Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS-PAGE coupled with nanoLC-ESI-MS/MS bottom-up proteomics. J Proteomics. 2013 Jan; 78: 172-87. Human tissue
140Gonzalez JC, Medina SC, Rodriguez A, Osma JF, Alméciga-Díaz CJ, Sánchez OF. Production of Trametes pubescens Laccase under Submerged and Semi-Solid Culture Conditions on Agro-Industrial Wastes. PLoS One. 2013 Sep; 8(9): e73721. Cell line
139Bi F, Huang C, Tong J, Qiu G, Huang B, Wu Q, Li F, Xu Z, Bowser R, Xia XG, Zhou H. Reactive astrocytes secrete lcn2 to promote neuron death. PNAS USA. 2013 Mar; 110(1): 4069-4074.Rat brain
138Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth.  United States Patent WO2013040211 A1. 2013 Mar. Human cells
137Caro P, Kishan AU, Norberg E, Stanley IA, Chapuy B, Ficarro SB, Polak K, Tondera D, Gounarides J, Yin H, Zhou F, Green MR, Chen L, Monti S, Marto JA, Shipp MA, Danial NN. Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma. Cancer Cell. 2012 Oct; 22(4): 547-60. Human cells
136Vaishampayan PA, Rabbow E, Horneck G, Venkateswaran KJ. Survival of Bacillus pumilus spores for a prolonged period of time in real space conditions.  Astrobiology. 2012 May; 12(5): 487-97.Bacteria
135Engel BD, Ishikawa H, Wemmer KA, Geimer S, Wakabayashi K, Hirono M, Craige B, Pazour GJ, Witman GB, Kamiya R, Marshall WF. The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function. J Cell Biol. 2012 Oct; 199(1): 151-67.Human biopsy
134Kalupahana NS, Massiera F, Quignard-Boulange A, Ailhaud G, Voy BH, Wasserman DH, Moustaid-Moussa N. Overproduction of angiotensinogen from adipose tissue induces adipose inflammation, glucose intolerance, and insulin resistance. Obesity (Silver Spring). 2012 Jan; 20(1): 48-56.Mouse tissue
133de Castro RO, Zhang J, Groves JR, Barbu EA, Siraganian RP. Once phosphorylated, tyrosines in carboxyl terminus of protein-tyrosine kinase Syk interact with signaling proteins, including TULA-2, a negative regulator of mast cell degranulation. J Biol Chem. 2012 Mar; 287(11): 8194-204.Human cells
132McCoy KB, Derecho I, Wong T, Tran HM, Huynh TD, La Duc MT, Venkateswaran K, Mogul R. Insights into the extremotolerance of Acinetobacter radioresistens 50v1, a gram-negative bacterium isolated from the Mars Odyssey spacecraft. Astrobiology. 2012 Sep; 12(9): 854-62.Bacteria
131Hu Y, Matkovich SJ, Hecker PA, Zhang Y, Edwards JR, Dorn GW 2nd. Epitranscriptional orchestration of genetic reprogramming is an emergent property of stress-regulated cardiac microRNAs. PNAS USA. 2012 Nov; 109(48): 19864-9.Rat heart tissue
130Yang Y, Primrose DA, Leung AC, Fitzsimmons RB, McDermand MC, Missellbrook A, Haskins J, Smylie AS, Hughes SC. The PP1 phosphatase flapwing regulates the activity of Merlin and Moesin in Drosophila. Dev Biol. 2012 Jan; 361(2): 412-26.Drosophila
129Zhang HH, Feng L, Wang W, Magness RR, Chen DB. Estrogen-responsive nitroso-proteome in uterine artery endothelial cells: role of endothelial nitric oxide synthase and estrogen receptor-β. J Cell Physiol. J Cell Physiol. 2012 Jan; 227(1): 146-59.Human cell line
128Kohlgraf KG, Ackermann AR, Burnell KK, Srikantha RN, Joly SA, Bartlett JA, Gakhar L, Johnson GK, McCray PB Jr, Guthmiller JM, Brogden KA. Quantitation of SPLUNC1 in saliva with an xMAP particle-based antibody capture and detection immunoassay. Arch Oral Biol. 2012 Feb; 57(2): 197-204. Human saliva
127Koka S, Xi L, Kukreja RC. Chronic treatment with long acting phosphodiesterase-5 inhibitor tadalafil alters proteomic changes associated with cytoskeletal rearrangement and redox regulation in Type 2 diabetic hearts. Basic Res Cardiol. 2012 Mar; 107(2): 249.Mouse heart tissue
126Lau CS, Wong DT. Breast cancer exosome-like microvesicles and salivary gland cells interplay alters salivary gland cell-derived exosome-like microvesicles in vitro. PLoS One. 2012 Mar; 7(3): e33037.Human cells
125Zhu SG, Xi L, Kukreja RC. Type 2 diabetic obese db/db mice are refractory to myocardial ischaemic post-conditioning in vivo: potential role for Hsp20, F1-ATPase δ and Echs1.J Cell Mol Med. 2012 Apr; 16(4): 950-8.Mouse heart tissue
124Streckfus CF, Arreola D, Edwards C, Bigler L. Salivary Protein Profiles among HER2/neu-Receptor-Positive and -Negative Breast Cancer Patients: Support for Using Salivary Protein Profiles for Modeling Breast Cancer Progression. J Oncol. 2012 Apr; 2012: 413256.Human salivary
123Dorn GW 2nd, Matkovich SJ, Eschenbacher WH, Zhang Y. A human 3' miR-499 mutation alters cardiac mRNA targeting and function.  Circ Res. 2012 Mar; 110(7): 958-67.Mouse tissue
122Ho NK, Ossa JC, Silphaduang U, Johnson R, Johnson-Henry KC, Sherman PM. Enterohemorrhagic Escherichia coli O157:H7 Shiga toxins inhibit gamma interferon-mediated cellular activation. Infect Immun. 2012 Jul; 80(7): 2307-15.Bacteria
121Wang X, Mandal AK, Saito H, Pulliam JF, Lee EY, Ke ZJ, Lu J, Ding S, Li L, Shelton BJ, Tucker T, Evers BM, Zhang Z, Shi X. Arsenic and chromium in drinking water promote tumorigenesis in a mouse colitis-associated colorectal cancer model and the potential mechanism is ROS-mediated Wnt/β-catenin signaling pathway. Toxicol Appl Pharmacol. 2012 Jul; 262(1): 11-21.Mouse tissue
120Lakshmanan J, Seelan RS, Thangavel M, Vadnal RE, Janckila AJ, Casanova MF, Parthasarathy LK, Parthasarathy RN. Proteomic Analysis of Rat Prefrontal Cortex after Chronic Lithium Treatment. J Proteomics Bioinform. 2012 Jan; 5: 140-146.Rat tissue
119Banerjee HN, Mahaffey K, Riddick E, Banerjee A, Bhowmik N, Patra M. Search for a diagnostic/prognostic biomarker for the brain cancer glioblastoma multiforme by 2D-DIGE-MS technique. Mol Cell Biochem. 2012 Aug; 367(1-2): 59-63.Human biopsy
118Kuzembayeva M, Chiu YF, Sugden B. Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs. PLoS One. 2012 Oct; 7(10): e47409. Virus
117Singh SV, Kim SH, Sehrawat A, Arlotti JA, Hahm ER, Sakao K, Beumer JH, Jankowitz RC, Chandra-Kuntal K, Lee J, Powolny AA, Dhir R. Biomarkers of phenethyl isothiocyanate-mediated mammary cancer chemoprevention in a clinically relevant mouse model. J Natl Cancer Inst. 2012 Aug; 104(16): 1228-39. Mouse plasma
116Nowak G, Bakajsova D. Protein kinase C-α activation promotes recovery of mitochondrial function and cell survival following oxidant injury in renal cells. Am J Physiol Renal Physiol. 2012 Aug; 303(4): F515-26. Rabbit tissue
115Matkovich SJ, Hu Y, Eschenbacher WH, Dorn LE, Dorn GW 2nd. Direct and indirect involvement of microRNA-499 in clinical and experimental cardiomyopathy. Circ Res. 2012 Aug; 111(5): 521-31. Mouse heart tissue
114Xiao D, Ohlendorf J, Chen Y, Taylor DD, Rai SN, Waigel S, Zacharias W, Hao H, McMasters KM. Identifying mRNA, microRNA and protein profiles of melanoma exosomes. PLoS One. 2012 Oct; 7(10): e46874. Human cell line
113Hesabi B, Danziger RS, Kotlo KU. Heterogeneous nuclear ribonucleoprotein A1 is a novel cellular target of atrial natriuretic peptide signaling in renal epithelial cells. Cell Signal. 2012 May; 24(5): 1100-8. Human cell line
112Martinez-Outschoorn UE, Lin Z, Whitaker-Menezes D, Howell A, Sotgia F, Lisanti MP. Ketone body utilization drives tumor growth and metastasis. Cell Cycle. 2012 Nov; 11(21): 3964-71. Mouse tissue
111Grillon JM, Johnson KR, Kotlo K, Danziger RS. Non-histone lysine acetylated proteins in heart failure. Biophys Acta. 2012 Apr; 1822(4): 607-14.Rat tissue
110Xiao D, Ohlendorf J, Chen Y, Taylor DD, Rai SN, Waigel S, Zacharias W, Hao H, McMasters KM. Identifying mRNA, microRNA and protein profiles of melanoma exosomes. PLoS One. 2012 Oct; 7(10): e46874.Cell line
109Govindaraju A, Dogan S, Rodriguez-Osorio N, Grant K, Kaya A, Memili E. Delivering value from sperm proteomics for fertility. Cell Tissue Res. 2012 Sep; 349(3): 783-93. Cow sperm cells
108Martinez-Outschoorn UE, Lin Z, Whitaker-Menezes D, Howell A, Lisanti MP, Sotgia F. Ketone bodies and two-compartment tumor metabolism: stromal ketone production fuels mitochondrial biogenesis in epithelial cancer cells. Cell Cycle. 2012 Nov; 11(21): 3956-63. Human cell line
107Tang H, Lee M, Sharpe O, Salamone L, Noonan EJ, Hoang CD, Levine S, Robinson WH, Shrager JB. Oxidative stress-responsive microRNA-320 regulates glycolysis in diverse biological systems. FASEB J. 2012 Nov; 26(11): 4710-21.Mouse tissue
106Martinez-Outschoorn UE, Sotgia F, Lisanti MP. Power surge: supporting cells "fuel" cancer cell mitochondria. Cell Metab. 2012 Jan; 15(1): 4-5. Virus
105Li G, Cai W, Hussein A, Wannemuehler YM, Logue CM, Nolan LK. Proteome response of an extraintestinal pathogenic Escherichia coli strain with zoonotic potential to human and chicken sera. J Proteomics. 2012 Aug; 75(15): 4853-62.E. coli cells
104Diaz F, Garcia S, Padgett KR, Moraes CT. A defect in the mitochondrial complex III, but not complex IV, triggers early ROS-dependent damage in defined brain regions. Hum Mol Genet. 2012 Dec; 21(23): 5066-77.Mouse brain tissue
103Elder GA, Dorr NP, De Gasperi R, Gama Sosa MA, Shaughness MC, Maudlin-Jeronimo E, Hall AA, McCarron RM, Ahlers ST. Blast exposure induces post-traumatic stress disorder-related traits in a rat model of mild traumatic brain injury. J Neurotrauma. 2012 Nov; 29(16): 2564-75. Rat brain tissue
102Kotlo K, Johnson KR, Grillon JM, Geenen DL, deTombe P, Danziger RS. Phosphoprotein abundance changes in hypertensive cardiac remodeling. J Proteomics. 2012 Dec; 77: 1-13. Rat heart tissue
101Liu ZL, Weber SA, Cotta MA. Isolation and Characterization of a β-Glucosidase from a Clavispora Strain with Potential Applications in Bioethanol Production from Cellulosic Materials. BioEnergy Research. 2012 Jul; 6: 65–74).Clavispora
100Purushothaman P, McDowell ME, McGuinness J, Salas R, Rumjahn SM, Verma SC. Kaposi's sarcoma-associated herpesvirus-encoded LANA recruits topoisomerase IIβ for latent DNA replication of the terminal repeats. J Virol. 2012 Sep; 86(18): 9983-94. Virus
99Ahmed A, Gaadhe K, Sharma GP, Kumar N, Neculai M, Hui R, Mohanty D, Sharma P. Novel insights into the regulation of malarial calcium-dependent protein kinase 1. FASEB J. 2012 Aug; 26(8): 3212-21.Parasite
98Curry E, Stoops MA, Roth TL. Non-invasive detection of candidate pregnancy protein biomarkers in the feces of captive polar bears (Ursus maritimus). Theriogenology. 2012 Jul; 78(2): 308-14.Polar bear fecal
97Scharf B, Clement CC, Wu XX, Morozova K, Zanolini D, Follenzi A, Larocca JN, Levon K, Sutterwala FS, Rand J, Cobelli N, Purdue E, Hajjar KA, Santambrogio L. Annexin A2 binds to endosomes following organelle destabilization by particulate wear debris. Nat Commun. 2012 Mar; 3: 755. Mouse bone marrow
96Pinzón A, Rodriguez-R LM, González A, Bernal A, Restrepo S. Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions. Brief Bioinform. 2011 Mar; 12(2): 151-62.Plant tissue
95Ramadoss J, Magness RR. 2-D DIGE uterine endothelial proteomic profile for maternal chronic binge-like alcohol exposure. J Proteomics. 2011 Nov; 74(12): 2986-94.Bovine tissue
94Frank AK, Pietsch EC, Dumont P, Tao J, Murphy ME. Wild-type and mutant p53 proteins interact with mitochondrial caspase-3. Cancer Biol Ther. 2011 Apr; 11(8): 740-5.Human cell line
93Pimkina J, Murphy ME. Interaction of the ARF tumor suppressor with cytosolic HSP70 contributes to its autophagy function. Cancer Biol Ther. 2011 Sep; 12(6): 503-9.Human cell line
92Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. PNAS USA. 2011 Apr 5; 108(14): 5795-800.Mouse tissue
91Huang Z, Hoffmann FW, Norton RL, Hashimoto AC, Hoffmann PR. Selenoprotein K is a novel target of m-calpain, and cleavage is regulated by Toll-like receptor-induced calpastatin in macrophages. J Biol Chem. 2011 Oct; 286(40): 34830-8.Cells
90Zhang HH, Wang YP, Chen DB. Analysis of nitroso-proteomes in normotensive and severe preeclamptic human placentas. Biol Reprod. 2011 84(5): 966-75. Human placentas
89Kassa RM, Kasensa NL, Monterroso VH, Kayton RJ, Klimek JE, David LL, Lunganza KR, Kayembe KT, Bentivoglio M, Juliano SL, Tshala-Katumbay DD. On the biomarkers and mechanisms of konzo, a distinct upper motor neuron disease associated with food (cassava) cyanogenic exposure.  Food Chem Toxicol. 2011 Mar; 49(3): 571-8. Neuron cells
88Froman DP, Feltmann AJ, Pendarvis K, Cooksey AM, Burgess SC, Rhoads DD. Physiology and endocrinology symposium: a proteome-based model for sperm mobility phenotype. J Anim Sci. 2011 . May; 89(5): 1330-7.Sperm cells
87Hill D, Coss C, Dubey JP, Wroblewski K, Sautter M, Hosten T, Muñoz-Zanzi C, Mui E, Withers S, Boyer K, Hermes G, Coyne J, Jagdis F, Burnett A, McLeod P, Morton H, Robinson D, McLeod R. Identification of a sporozoite-specific antigen from Toxoplasma gondii. J Parasitol. 2011 Apr; 97(2): 328-37.Toxoplasma gondii
86Antunes RF, Brandão C, Maia M, Arosa FA. Red blood cells release factors with growth and survival bioactivities for normal and leukemic T cells. Immunol Cell Biol. 2011 Jan; 89(1): 111-21. Red blood cells
85Huang NF, Kurpinski K, Fang Q, Lee RJ, Li S. Proteomic identification of biomarkers of vascular injury. Am J Transl Res. 2011 Feb; 3(2): 139-48. Rat plasma
84Marshall JL, Huestis DL, Garcia C, Hiromasa Y, Wheeler S, Noh S, Tomich JM, Howard DJ. Comparative proteomics uncovers the signature of natural selection acting on the ejaculate proteomes of two cricket species isolated by postmating, prezygotic phenotypes. Mol Biol Evol. 2011 Jan; 28(1): 423-35. Cricket
83Kirpich IA, Gobejishvili LN, Bon Homme M, Waigel S, Cave M, Arteel G, Barve SS, McClain CJ, Deaciuc IV. Integrated hepatic transcriptome and proteome analysis of mice with high-fat diet-induced nonalcoholic fatty liver disease. J Nutr Biochem. 2011 Jan; 22(1): 38-45. Mouse liver tissue
82Posokhova E, Song H, Belcastro M, Higgins L, Bigley LR, Michaud NA, Martemyanov KA, Sokolov M. Disruption of the chaperonin containing TCP-1 function affects protein networks essential for rod outer segment morphogenesis and survival. Mol Cell Proteomics. 2011 Jan; 10(1): M110.000570. Retina
81Thakkar D, Shervington L, Shervington A. Proteomic studies coupled with RNAi methodologies can shed further light on the downstream effects of telomerase in glioma. Cancer Invest. 2011 Feb; 29(2): 113-22.Glioma cells
80Arce-Paredes P, Mora-Escobedo R, Luna-Arias JP, Mendoza-Hernandez G, Rojas-Espinosa O. Heat, Salinity, and Acidity, Commonly Upregulate A1aB1b Proglycinin in Soybean Embryonic Axes. Soybean - Biochemistry, Chemistry and Physiology. 2011 Apr; 402-422.Soybeans
79Green KN, Khashwji H, Estrada T, Laferla FM. ST101 induces a novel 17 kDa APP cleavage that precludes Aβ generation in vivo. Ann Neurol. 2011 May; 69(5): 831-44. Mouse tissue
78Maldonado R, Wei R, Kachlany SC, Kazi M, Balashova NV. Cytotoxic effects of Kingella kingae outer membrane vesicles on human cells. Microb Pathog. 2011 Jul-Aug; 51(1-2): 22-30.Human cells
77Mains LM, Christenson L, Yang B, Sparks AE, Mathur S, Van Voorhis BJ. Identification of apolipoprotein A1 in the human embryonic secretome. Fertil Steril. 2011 Aug; 96(2): 422-427.e2.Human blastocysts
76Chae HS, Kim YH. A NELL-1 Binding Protein: Vimentin. J Kor Dent Sci. 2011 Jun; 4(1): 6-13.C. elegans
75Saraswathy S, Rao NA. Posttranslational modification of differentially expressed mitochondrial proteins in the retina during early experimental autoimmune uveitis. Mol Vis. 2011 Jul; 17: 1814-21.Mouse mitochondria
74Powolny AA, Bommareddy A, Hahm ER, Normolle DP, Beumer JH, Nelson JB, Singh SV. Chemopreventative potential of the cruciferous vegetable constituent phenethyl isothiocyanate in a mouse model of prostate cancer.  J Natl Cancer Inst. 2011 Apr; 103(7): 571-84.Mouse tissue
73Ji C, Kaplowitz N, Lau MY, Kao E, Petrovic LM, Lee AS. Liver-specific loss of glucose-regulated protein 78 perturbs the unfolded protein response and exacerbates a spectrum of liver diseases in mice. Hepatology. 2011 Jul; 54(1):229-39.Mouse liver
72Gong K, Xing D, Li P, Hilgers RH, Hage FG, Oparil S, Chen YF. cGMP inhibits TGF-beta signaling by sequestering Smad3 with cytosolic beta2-tubulin in pulmonary artery smooth muscle cells. Mol Endocrinol. 2011 Oct; 25(10): 1794-803. Cells
71Oggé G, Romero R, Lee DC, Gotsch F, Than NG, Lee J, Chaiworapongsa T, Dong Z, Mittal P, Hassan SS, Kim CJ. Chronic chorioamnionitis displays distinct alterations of the amniotic fluid proteome. J Pathol. 2011 Mar; 223(4): 553-65. Amniotic fluid
70Wang J, Han X, Saha S, Xu T, Rai R, Zhang F, Wolf YI, Wolfson A, Yates JR 3rd, Kashina A. Arginyltransferase is an ATP-independent self-regulating enzyme that forms distinct functional complexes in vivo. Chem Biol. 2011 Jan; 18(1): 121-30.Cells
69Maldonado R, Wei R, Kachlany SC, Kazi M, Balashova NV. Cytotoxic effects of Kingella kingae outer membrane vesicles on human cells. Microb Pathog. 2011 Jul-Aug; 51(1-2): 22-30. Cells
68Hopf PS, Ford RS, Zebian N, Merkx-Jacques A, Vijayakumar S, Ratnayake D, Hayworth J, Creuzenet C. Protein Glycosylation in Helicobacter pylori: Beyond the Flagellins? PLoS One. 2011 Sep; 6(9): e25722.Cells
67Bryant KG, Camacho J, Jasmin JF, Wang C, Addya S, Casimiro MC, Fortina P, Balasubramaniam S, Knudsen KE, Schwarting R, Lisanti MP, Mercier I. Caveolin-1 overexpression enhances androgen-dependent growth and proliferation in the mouse prostate. Int J Biochem Cell Biol. 2011 Sep; 43(9): 1318-29.Mouse prostate
66Boone LR, Lagor WR, Moya Mde L, Niesen MI, Rothblat GH, Ness GC. Thyroid hormone enhances the ability of serum to accept cellular cholesterol via the ABCA1 transporter. Atherosclerosis. 2011 Sep; 218(1): 77-82.Rat serum
65Xi L, Zhu SG, Hobbs DC, Kukreja RC. Identification of protein targets underlying dietary nitrate-induced protection against doxorubicin cardiotoxicity. J Cell Mol Med. 2011 Nov; 15(11): 2512-24.Mouse heart tissue
64Trimmer C, Sotgia F, Whitaker-Menezes D, Balliet RM, Eaton G, Martinez-Outschoorn UE, Pavlides S, Howell A, Iozzo RV, Pestell RG, Scherer PE, Capozza F, Lisanti MP. Caveolin-1 and mitochondrial SOD2 (MnSOD) function as tumor suppressors in the stromal microenvironment: a new genetically tractable model for human cancer associated fibroblasts. Cancer Biol Ther. 2011 Feb; 11(4): 383-94.Human cell line
63Chen Y, Wang D, Guo Z, Zhao J, Wu B, Deng H, Zhou T, Xiang H, Gao F, Yu X, Liao J, Ward T, Xia P, Emenari C, Ding X, Thompson W, Ma K, Zhu J, Aikhionbare F, Dou K, Cheng SY, Yao X. Rho kinase phosphorylation promotes ezrin-mediated metastasis in hepatocellular carcinoma. Cancer Res. 2011 Mar; 71(5): 1721-9. Human cells
62Miharada K, Karlsson G, Rehn M, Rörby E, Siva K, Cammenga J, Karlsson S. Cripto regulates hematopoietic stem cells as a hypoxic-niche-related factor through cell surface receptor GRP78. Cell Stem Cell. 2011 Oct; 9(4): 330-44.Stem cells
61Castello-Cros R, Bonuccelli G, Molchansky A, Capozza F, Witkiewicz AK, Birbe RC, Howell A, Pestell RG, Whitaker-Menezes D, Sotgia F, Lisanti MP. Matrix remodeling stimulates stromal autophagy, "fueling" cancer cell mitochondrial metabolism and metastasis. Cell Cycle. 2011 Jun; 10(12): 2021-34. Human cell line
60Kalupahana NS, Claycombe KJ, Moustaid-Moussa N. (n-3) Fatty acids alleviate adipose tissue inflammation and insulin resistance: mechanistic insights. Adv Nutr. 2011 Jul; 2(4): 304-16. Mouse tissue
59Chiavarina B, Whitaker-Menezes D, Migneco G, Martinez-Outschoorn UE, Pavlides S, Howell A, Tanowitz HB, Casimiro MC, Wang C, Pestell RG, Grieshaber P, Caro J, Sotgia F, Lisanti MP. HIF1-alpha functions as a tumor promoter in cancer associated fibroblasts, and as a tumor suppressor in breast cancer cells: Autophagy drives compartment-specific oncogenesis. Cell Cycle. 2010 Sep; 9(17): 3534-51.Human cell line
58Bonuccelli G, Whitaker-Menezes D, Castello-Cros R, Pavlides S, Pestell RG, Fatatis A, Witkiewicz AK, Vander Heiden MG, Migneco G, Chiavarina B, Frank PG, Capozza F, Flomenberg N, Martinez-Outschoorn UE, Sotgia F, Lisanti MP. The reverse Warburg effect: glycolysis inhibitors prevent the tumor promoting effects of caveolin-1 deficient cancer associated fibroblasts. Cell Cycle. 2010 May; 9(10): 1960-71.Human cell line
57Migneco G, Whitaker-Menezes D, Chiavarina B, Castello-Cros R, Pavlides S, Pestell RG, Fatatis A, Flomenberg N, Tsirigos A, Howell A, Martinez-Outschoorn UE, Sotgia F, Lisanti MP. Glycolytic cancer associated fibroblasts promote breast cancer tumor growth, without a measurable increase in angiogenesis: evidence for stromal-epithelial metabolic coupling. Cell Cycle. 2010 Jun; 9(12): 2412-22. Human cells
56Birk E, Har-Zahav A, Manzini CM, Pasmanik-Chor M, Kornreich L, Walsh CA, Noben-Trauth K, Albin A, Simon AJ, Colleaux L, Morad Y, Rainshtein L, Tischfield DJ, Wang P, Magal N, Maya I, Shoshani N, Rechavi G, Gothelf D, Maydan G, Shohat M, Basel-Vanagaite L. SOBP is mutated in syndromic and nonsyndromic intellectual disability and is highly expressed in the brain limbic system. Am J Hum Genet. 2010 Nov; 87(5): 694-700. Mouse brain
55Prescott MA, Pastey MK. Identification of Unique Blood and Urine Biomarkers in Influenza Virus and Staphylococcus aureus Co-infection: A Preliminary Study. Biomarker Insights. 2010 Dec; 5: 145-51. Mouse urine
54Balestrieri ML, Giovane A, Milone L, Felice F, Fiorito C, Crudele V, Esposito A, Rossiello R, Minucci PB, Farzati B, Servillo L, Napoli C. Modification of the detrimental effect of TNF-α on human endothelial progenitor cells by fasudil and Y27632. J Biochem Mol Toxicol. 2010 Nov-Dec; 24(6): 351-60.Human endothelial progenitor cells
53Paczkowski M, Krisher R. Aberrant protein expression is associated with decreased developmental potential in porcine cumulus-oocyte complexes. Mol Reprod Dev. 2010 Jan; 77(1): 51-8. Porcine cumulus-oocyte complexes
52Rex EB, Rankin ML, Yang Y, Lu Q, Gerfen CR, Jose PA, Sibley DR. Identification of RanBP 9/10 as interacting partners for protein kinase C (PKC) gamma/delta and the D1 dopamine receptor: regulation of PKC-mediated receptor phosphorylation. Mol Pharmacol. 2010 Jul; 78(1): 69-80. HEK293T cells
51Kongara S, Kravchuk O, Teplova I, Lozy F, Schulte J, Moore D, Barnard N, Neumann CA, White E, Karantza V. Autophagy regulates keratin 8 homeostasis in mammary epithelial cells and in breast tumors. Mol Cancer Res. 2010 Jun; 8(6): 873-84. Mouse mammary epithelial cells
50Zhang HH, Feng L, Livnat I, Hoh JK, Shim JY, Liao WX, Chen DB. Estradiol-17beta stimulates specific receptor and endogenous nitric oxide-dependent dynamic endothelial protein S-nitrosylation: analysis of endothelial nitrosyl-proteome. Endocrinology. 2010 Aug; 151(8): 3874-87. Human endothelial cell
49Clement CC, Cannizzo ES, Nastke MD, Sahu R, Olszewski W, Miller NE, Stern LJ, Santambrogio L. An expanded self-antigen peptidome is carried by the human lymph as compared to the plasma. PLoS One. 2010 Mar; 5(3): e9863. Human plasma and lymph
48Zhang L, Xiao H, Karlan S, Zhou H, Gross J, Elashoff D, Akin D, Yan X, Chia D, Karlan B, Wong DT. Discovery and preclinical validation of salivary transcriptomic and proteomic biomarkers for the non-invasive detection of breast cancer. PLoS One. 2010 Dec; 5(12): e15573. Saliva
47Palanisamy V, Sharma S, Deshpande A, Zhou H, Gimzewski J, Wong DT. Nanostructural and transcriptomic analyses of human saliva derived exosomes. PLoS One. 2010 Jan; 5(1): e8577. Human oral keratinocytes
46Luo WI, Dizin E, Yoon T, Cowan JA. Kinetic and structural characterization of human mortalin. Protein Expr Purif. 2010 Jul; 72(1): 75-81. Purified recombinant protein (mass spec)
45Doukhanine E, Gavino C, Haines JD, Almazan G, Richard S. The QKI-6 RNA binding protein regulates actin-interacting protein-1 mRNA stability during oligodendrocyte differentiation. Mol Biol Cell. 2010 Sep; 21(17): 3029-40. Human glioblastoma cells
44Villar M, Ayllón N, Busby AT, Galindo RC, Blouin EF, Kocan KM, Bonzón-Kulichenko E, Zivkovic Z, Almazán C, Torina A, Vázquez J, de la Fuente J. Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock. Int J Proteomics. 2010 Sep; 2010: 657261. Tick cells
43Loheswaran G, Stanojcic M, Xu L, Sakic B. Autoimmunity as a principal pathogenic factor in the refined model of neuropsychiatric lupus. Clin Exp Neuroimmunol. 2010 Sep; 1(3): 141-152. Mouse serum and cerebrospinal fluid
42Kang MY, Zhang Y, Matkovich SJ, Diwan A, Chishti AH, Dorn GW 2nd. Receptor-independent cardiac protein kinase Calpha activation by calpain-mediated truncation of regulatory domains. Circ Res. 2010 Oct; 107(7): 903-12. Mouse ventricular cells
41Martínez-Pastor M, Proft M, Pascual-Ahuir A. Adaptive changes of the yeast mitochondrial proteome in response to salt stress. OMICS. 2010 Oct; 14(5): 541-52. Yeast mitochondrial cells
40Encinas P, Rodriguez-Milla MA, Novoa B, Estepa A, Figueras A, Coll J. Zebrafish fin immune responses during high mortality infections with viral haemorrhagic septicemia rhabdovirus. A proteomic and transcriptomic approach. BMC Genomics. 2010 Sep; 11: 518. Zebrafish fins
39Mellgren RL. A plasma membrane wound proteome: reversible externalization of intracellular proteins following reparable mechanical damage. J Biol Chem. 2010 Nov; 285(47): 36597-607. Wound-associated proteins (mass spec)
38Zhou Q, Snider NT, Liao J, Li DH, Hong A, Ku NO, Cartwright CA, Omary MB. Characterization of in vivo keratin 19 phosphorylation on tyrosine-391. PLoS One. 2010 Oct; 5(10): e13538. Keratin proteins (mass spec)
37Kalupahana NS, Claycombe K, Newman SJ, Stewart T, Siriwardhana N, Matthan N, Lichtenstein AH, Moustaid-Moussa N. Eicosapentaenoic acid prevents and reverses insulin resistance in high-fat diet-induced obese mice via modulation of adipose tissue inflammation. J Nutr. 2010 Nov; 140(11): 1915-22.Cultured adipocytes
36Lamore SD, Qiao S, Horn D, Wondrak GT. Proteomic identification of cathepsin B and nucleophosmin as novel UVA-targets in human skin fibroblasts. Photochem Photobiol. 2010 Nov-Dec; 86(6): 1307-17. Human dermal fibroblasts
35Petersen PS, Woldbye DP, Madsen AN, Egerod KL, Jin C, Lang M, Rasmussen M, Beck-Sickinger AG, Holst B. In vivo characterization of high Basal signaling from the ghrelin receptor. Endocrinology. 2009 Nov; 150(11): 4920-30. Cells
34Martin JN, Bair TB, Bode N, Dauer WT, Gonzalez-Alegre P. Transcriptional and proteomic profiling in a cellular model of DYT1 dystonia. Neuroscience. 2009 Dec; 164(2): 563-72. Human cell line
33Mathew R, Karp CM, Beaudoin B, Vuong N, Chen G, Chen HY, Bray K, Reddy A, Bhanot G, Gelinas C, Dipaola RS, Karantza-Wadsworth V, White E. Cell. 2009 Jun 12; 137(6): 1062-75. Baby mouse kidney cells
32Alvares K, Dixit SN, Lux E, Veis A. Echinoderm phosphorylated matrix proteins UTMP16 and UTMP19 have different functions in sea urchin tooth mineralization. J Biol Chem. 2009 Sep; 284(38): 26149-60. Sea urchin
31Gupta S, Varghese M, Shareef MM, Ahmed MM. Human Prostate Cancer Cells Secrete Neuro-Protective Factors in Response to Cryotherapy. Mol Cell Pharmacol. 2009 Jan; 1(4): 200-206. Human prostate cancer cells
30Kurpinski K, Chu J, Wang D, Li S. Proteomic Profiling of Mesenchymal Stem Cell Responses to Mechanical Strain and TGF-beta1. Cell Mol Bioeng. 2009 Dec; 2(4): 606-614. Human mesenchymal stem cells
29Pimkina J, Humbey O, Zilfou JT, Jarnik M, Murphy ME. ARF induces autophagy by virtue of interaction with Bcl-xl.  J Biol Chem. 2009 Jan; 284(5): 2803-10. Immunoprecipitates from purified mitochondria
28Fong LG, Vickers TA, Farber EA, Choi C, Yun UJ, Hu Y, Yang SH, Coffinier C, Lee R, Yin L, Davies BS, Andres DA, Spielmann HP, Bennett CF, Young SG. Activating the synthesis of progerin, the mutant prelamin A in Hutchinson-Gilford progeria syndrome, with antisense oligonucleotides. Hum Mol Genet. 2009 Jul; 18(13): 2462-71. Human fibroblasts
27Jones P, Crow JP. Waging a War Against Motor Neuron Disease: On the Frontier of Translational Research for Lou Gehrig's Disease. OmniScriptum. 2009 Apr. Mouse cells
26Petersen PS, Woldbye DP, Madsen AN, Egerod KL, Jin C, Lang M, Rasmussen M, Beck-Sickinger AG, Holst B. In vivo characterization of high Basal signaling from the ghrelin receptor. Endocrinology. 2009 Nov; 150(11): 4920-30. Peptide characterization (mass spec)
25Tshala-Katumbay D, Monterroso V, Kayton R, Lasarev M, Sabri M, Spencer P. Probing mechanisms of axonopathy. Part II: Protein targets of 2,5-hexanedione, the neurotoxic metabolite of the aliphatic solvent n-hexane. Toxicol Sci. 2009 Feb; 107(2): 482-9. Rat spinal cords
24Pileggi A, Ribeiro MM, Hogan AR, Molano RD, Cobianchi L, Ichii H, Embury J, Inverardi L, Fornoni A, Ricordi C, Pastori RL. Impact of pancreatic cold preservation on rat islet recovery and function. Transplantation. 2009 May; 87(10): 1442-50. Rat pancreatic tissue
23Shi T, Moulton VR, Lapchak PH, Deng GM, Dalle Lucca JJ, Tsokos GC. Ischemia-mediated aggregation of the actin cytoskeleton is one of the major initial events resulting in ischemia-reperfusion injury. Am J Physiol Gastrointest Liver Physiol. 2009 Feb; 296(2): G339-47. Mouse jejunal segments
22Caplan JL, Zhu X, Mamillapalli P, Marathe R, Anandalakshmi R, Dinesh-Kumar SP. Induced ER chaperones regulate a receptor-like kinase to mediate antiviral innate immune response in plants. Cell Host Microbe. 2009 Nov; 6(5): 457-69. Plant cells
21Kang X, Chen W, Kim RH, Kang MK, Park NH. Regulation of the hTERT promoter activity by MSH2, the hnRNPs K and D, and GRHL2 in human oral squamous cell carcinoma cells. Oncogene. 2009 Jan; 28(4): 565-74. IP samples
20Tector M, Khatri BO, Kozinski K, Dennert K, Oaks MK. Biochemical analysis of CTLA-4 immunoreactive material from human blood. BMC Immunol. 2009 Sep; 10: 51. Human plasma
19Averette KM, Pratt MR, Yang Y, Bassilian S, Whitelegge JP, Loo JA, Muir TW, Bradley KA. Anthrax lethal toxin induced lysosomal membrane permeabilization and cytosolic cathepsin release is Nlrp1b/Nalp1b-dependent. PLoS One. 2009 Nov; 4(11): e7913. Macrophage cells
18Saraswathy S, Rao NA. Mitochondrial proteomics in experimental autoimmune uveitis oxidative stress. Ophthalmol Vis Sci. 2009 Dec; 50(12): 5559-66. Mouse retinal mitochondria
17Hogan AR, Doni M, Ribeiro MM, Molano RD, Cobianchi L, Molina J, Zahr E, Ricordi C, Pastori RL, Pileggi A. Ischemic preconditioning improves islet recovery after pancreas cold preservation. Transplant Proc. 2009 Jan-Feb; 41(1): 354-5. Mouse islet cells
16Pileggi A, Ribeiro MM, Hogan AR, Molano RD, Embury JE, Ichii H, Cobianchi L, Fornoni A, Ricordi C, Pastori RL. Effects of pancreas cold ischemia on islet function and quality. Transplant Proc. 2009 Jun; 41(5): 1808-9.Mouse islet cells
15Tao GZ, Looi KS, Toivola DM, Strnad P, Zhou Q, Liao J, Wei Y, Habtezion A, Omary MB. Keratins modulate the shape and function of hepatocyte mitochondria: a mechanism for protection from apoptosis. J Cell Sci. 2009 Nov; 122(Pt 21): 3851-5. Mouse liver mitochondria
14Balestrieri ML, Rienzo M, Felice F, Rossiello R, Grimaldi V, Milone L, Casamassimi A, Servillo L, Farzati B, Giovane A, Napoli C. High glucose downregulates endothelial progenitor cell number via SIRT1. Biochim Biophys Acta. 2008 Jun; 1784(6): 936-45. Human endothelial progenitor cells
13Corena-McLeod Mdel P, Oliveros A, Charlesworth C, Madden B, Liang YQ, Boules M, Shaw A, Williams K, Richelson E. Paliperidone as a mood stabilizer: a pre-frontal cortex synaptoneurosomal proteomics comparison with lithium and valproic acid after chronic treatment reveals similarities in protein expression. Brain Res. 2008 Oct; 1233: 8-19. Rat brain tissue
12Ho TD, Davis BM, Ritchie JM, Waldor MK. Type 2 secretion promotes enterohemorrhagic Escherichia coli adherence and intestinal colonization. Infect Immun. 2008 May; 76(5): 1858-65. Enterohemorrhagic E. coli
11Moore JC, Fu J, Chan YC, Lin D, Tran H, Tse HF, Li RA. Distinct cardiogenic preferences of two human embryonic stem cell (hESC) lines are imprinted in their proteomes in the pluripotent state. Biochem Biophys Res Commun. 2008 Aug; 372(4): 553-8. Human embryonic stem cells
10Siboo IR, Chaffin DO, Rubens CE, Sullam PM. Characterization of the accessory Sec system of Staphylococcus aureus. J Bacteriol. 2008 Sep; 190(18): 6188-96. Culture media
9Strnad P, Tao GZ, So P, Lau K, Schilling J, Wei Y, Liao J, Omary MB. "Toxic memory" via chaperone modification is a potential mechanism for rapid Mallory-Denk body reinduction. Hepatology. 2008 Sep; 48(3): 931-42.Mouse liver homogenates
8Tshala-Katumbay D, Monterroso V, Kayton R, Lasarev M, Sabri M, Spencer P. Probing mechanisms of axonopathy. Part I: Protein targets of 1,2-diacetylbenzene, the neurotoxic metabolite of aromatic solvent 1,2-diethylbenzene. Toxicol Sci. 2008 Sep; 105(1): 134-41. Rat spinal cords
7de la Fuente J, Blouin EF, Manzano-Roman R, Naranjo V, Almazán C, Pérez de la Lastra JM, Zivkovic Z, Jongejan F, Kocan KM. Functional genomic studies of tick cells in response to infection with the cattle pathogen, Anaplasma marginale. Genomics. 2007 Dec; 90(6): 712-22.Tick cells
6Saba H, Batinic-Haberle I, Munusamy S, Mitchell T, Lichti C, Megyesi J, MacMillan-Crow LA. Manganese porphyrin reduces renal injury and mitochondrial damage during ischemia/reperfusion. Free Radic Biol Med. 2007 May; 42(10): 1571-8.Rat renal tissue
5Wong CC, Xu T, Rai R, Bailey AO, Yates JR 3rd, Wolf YI, Zebroski H, Kashina A. Global analysis of posttranslational protein arginylation. PLoS Biol. 2007 Oct; 5(10): e258.Mouse fibroblasts
4Zhu S, Si ML, Wu H, Mo YY. MicroRNA-21 targets the tumor suppressor gene tropomyosin 1 (TPM1). J Biol Chem. 2007 May; 282(19): 14328-36.Mouse tumor cells
3Shen Y, Li L, Liao J. Assay: Proteomics Technology for Plasma and Serum. Genetic Engineering News. 2006 May; 26(10).N/A
2Amme S, Matros A, Schlesier B, Mock HP. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J Exp Bot. 2006 Mar; 57(7): 1537-46. Arabidopsis thaliana
1Nemunaitis J, Senzer N, Shen J, Maples P, Rao D, Tong A, Kumar P, Kuhn J, Zhang YA, Liao J, Khalil I, Hill C, Gazdar A. Clinical Study of Personalized Therapeutics Based on Genomic/Proteomic Profiling. Mol Ther. 2006 Jan; 13(1): S21-S22. Human biopsy